Jatropha Genome Database

JcCA0285281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285281.10 + phase: 0 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025006001 assembled CDS                                       149   4e-37
GSVIVT01016580001 assembled CDS                                       143   2e-35
GSVIVT01016191001 assembled CDS                                       140   2e-34
GSVIVT01033664001 assembled CDS                                       135   6e-33
GSVIVT01016193001 assembled CDS                                       127   2e-30

>GSVIVT01025006001 assembled CDS
          Length = 420

 Score =  149 bits (375), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 89/125 (71%), Gaps = 2/125 (1%)

Query: 3   IPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRWCY 62
           I  +DDVVLIQ      +P V+TVNCPDK GLGCD+CR IL FGL IT+ D STDG WCY
Sbjct: 2   IVLNDDVVLIQKGTKLGEPCVITVNCPDKTGLGCDICRTILNFGLYITKGDISTDGIWCY 61

Query: 63  IVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFVDR 122
           IV WV+P   SSSH + W +LK+RL    PPC + + F+Q+S+  +  P+YLLKF  +DR
Sbjct: 62  IVLWVIPH--SSSHIIRWSNLKDRLISICPPCSVSYCFNQQSDCTAPSPVYLLKFFCLDR 119

Query: 123 KGLLH 127
           KGLLH
Sbjct: 120 KGLLH 124


>GSVIVT01016580001 assembled CDS
          Length = 412

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 88/127 (69%), Gaps = 4/127 (3%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGI   DD VLIQ      +P  +T+NCPDKAGLGCDLCRIILEFGL I R DFSTDGRW
Sbjct: 1   MGI-FCDDAVLIQKGNKPGEPCSITINCPDKAGLGCDLCRIILEFGLCIARGDFSTDGRW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPPLYLLKFCFV 120
           CYIVF  VP    SS K+DW+SLKNRL  A P  L  + F+Q+  G S  P+Y+LK   +
Sbjct: 60  CYIVFSFVP--CPSSLKIDWESLKNRLLSACPSPLFSYCFNQQY-GSSPSPVYMLKLFCL 116

Query: 121 DRKGLLH 127
           DR GLLH
Sbjct: 117 DRNGLLH 123


>GSVIVT01016191001 assembled CDS
          Length = 416

 Score =  140 bits (352), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/126 (54%), Positives = 83/126 (65%), Gaps = 10/126 (7%)

Query: 7   DDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRWCYIVFW 66
           +DVVLI+ A+   DP+ +TVNCPDK GLGCDLCRIIL+FGLSITR D STDG+WCYI+FW
Sbjct: 8   EDVVLIRQAEKPGDPAEITVNCPDKTGLGCDLCRIILQFGLSITRGDVSTDGKWCYILFW 67

Query: 67  VVPDSTSSSHKLDWDSLKNRLSFASPPCL----IPFYFDQKSNGPSLPPLYLLKF-CFVD 121
           VV    +      W+ L  RL    P C     I FY  +    P  P ++LLKF C+ D
Sbjct: 68  VVGKPNTR-----WNLLHKRLMEVCPSCSSASGISFYKPEFQQQPKPPDVFLLKFWCYHD 122

Query: 122 RKGLLH 127
           RKGLLH
Sbjct: 123 RKGLLH 128


>GSVIVT01033664001 assembled CDS
          Length = 411

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 86/128 (67%), Gaps = 7/128 (5%)

Query: 1   MGIPTSDDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRW 60
           MGI   DDVV+I+ ++   +P V+TVNCPDK GLGCDLCRIIL FGLSI R D STDG+W
Sbjct: 1   MGI-LYDDVVIIRPSEKEGEPRVLTVNCPDKTGLGCDLCRIILFFGLSIVRVDVSTDGKW 59

Query: 61  CYIVFWVVPDSTSSSHKLDWDSLKNRLSFASPPCLIPFYFDQKSNGPSLPP-LYLLKFCF 119
           CYIVFW++  ST+      W  L++RLS A P C     F      P  PP ++LLKFC 
Sbjct: 60  CYIVFWIIGKSTTR-----WSLLQDRLSEACPSCSSASGFSYFQLQPPKPPDVFLLKFCC 114

Query: 120 VDRKGLLH 127
            DRKGLLH
Sbjct: 115 YDRKGLLH 122


>GSVIVT01016193001 assembled CDS
          Length = 416

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 81/126 (64%), Gaps = 10/126 (7%)

Query: 7   DDVVLIQHAKTSADPSVVTVNCPDKAGLGCDLCRIILEFGLSITRADFSTDGRWCYIVFW 66
           +DVVLI+ A+   DP+ +TVNCPDK GLGCDLCRIIL FGLSI+R D STDG+WCYI+FW
Sbjct: 8   EDVVLIRQAEKPGDPTEITVNCPDKIGLGCDLCRIILRFGLSISRGDSSTDGKWCYILFW 67

Query: 67  VVPDSTSSSHKLDWDSLKNRLSFASPPCL----IPFYFDQKSNGPSLPPLYLLKF-CFVD 121
           VV    +      W+ L  RL    P C     I FY  +    P  P ++LLKF C+ D
Sbjct: 68  VVGKPNTR-----WNLLHRRLLEVCPSCSSASGISFYKPEFQQQPKPPDVFLLKFWCYYD 122

Query: 122 RKGLLH 127
            KGLLH
Sbjct: 123 WKGLLH 128