Jatropha Genome Database

JcCA0285211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285211.10 + phase: 0 
         (116 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001989001 assembled CDS                                       158   5e-40

>GSVIVT01001989001 assembled CDS
          Length = 569

 Score =  158 bits (399), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 94/116 (81%), Gaps = 1/116 (0%)

Query: 1   MADRDRGDWEFYLRTLSSSARDSNLASDPASDPSLLQSIKRLYELCKQENSEDLVARVYP 60
           M DRD+ DWEF+LR+LS++ARDSN ++DPASDP+LL S+++LYELCK E SEDLVARVYP
Sbjct: 1   MVDRDK-DWEFHLRSLSATARDSNFSADPASDPNLLPSVRKLYELCKSEESEDLVARVYP 59

Query: 61  QINRLFQRSVNSLAQSKSSYGXXXXXXXXXXXXXGEVVLHDADPSLKTFFRSCLSR 116
           QIN++FQR V S++QS++S G             GE+VLHDADPSL+TFFRSCLSR
Sbjct: 60  QINKIFQRLVASVSQSRTSNGLLFLAILQFFLDFGEIVLHDADPSLRTFFRSCLSR 115