Jatropha Genome Database

JcCA0284281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0284281.10 + phase: 0 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000083001 assembled CDS                                       182   4e-47
GSVIVT01000084001 assembled CDS                                       178   8e-46
GSVIVT01017943001 assembled CDS                                       161   1e-40
GSVIVT01016738001 assembled CDS                                        51   2e-07

>GSVIVT01000083001 assembled CDS
          Length = 738

 Score =  182 bits (463), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 80/124 (64%), Positives = 99/124 (79%)

Query: 33  ERFKIKGKVVLMKKNVLDFNDVTASCFDRIHELFGKGVSIQLISAVNPDPENDLRGKHGK 92
           ++ KIKG VVLMKKNVLDFND  AS  DR+HEL G+GVS+QL+SAV+ DP N L+GK GK
Sbjct: 14  DKKKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQGVSLQLVSAVHGDPANGLQGKLGK 73

Query: 93  VAFLESWVKKITPMAAQETEFNITFDWDESMAVPGAFIIRNHHHSQLYLKTVTLEDVPGH 152
            A+LE W+  IT + A E+ F +TFDWDE +  PGAFIIRN+HHS+ YL+T+TLEDVPG 
Sbjct: 74  PAYLEDWITTITSLTAGESAFKVTFDWDEEIGEPGAFIIRNNHHSEFYLRTLTLEDVPGR 133

Query: 153 GRVH 156
           GR+H
Sbjct: 134 GRIH 137


>GSVIVT01000084001 assembled CDS
          Length = 900

 Score =  178 bits (452), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 78/124 (62%), Positives = 99/124 (79%)

Query: 33  ERFKIKGKVVLMKKNVLDFNDVTASCFDRIHELFGKGVSIQLISAVNPDPENDLRGKHGK 92
           ++ KI+G +VLMKKNVLDFND  A   DR+HELFG+GVS+QL+SAV+ DP N L+GK GK
Sbjct: 55  DKKKIEGTIVLMKKNVLDFNDFNAPVRDRVHELFGQGVSLQLVSAVHGDPANGLQGKIGK 114

Query: 93  VAFLESWVKKITPMAAQETEFNITFDWDESMAVPGAFIIRNHHHSQLYLKTVTLEDVPGH 152
            A+LE W+  IT + A E+ F +TFDWDE +  PGAFIIRN+HHS+ YL+T+TLEDVPG 
Sbjct: 115 PAYLEDWIITITSLTAGESAFKVTFDWDEEIGEPGAFIIRNNHHSEFYLRTLTLEDVPGR 174

Query: 153 GRVH 156
           GR+H
Sbjct: 175 GRIH 178


>GSVIVT01017943001 assembled CDS
          Length = 751

 Score =  161 bits (408), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 96/141 (68%)

Query: 16  MEGCCCQTKTKAKGMAEERFKIKGKVVLMKKNVLDFNDVTASCFDRIHELFGKGVSIQLI 75
            E  C     K+K   +E  KI+G+VVLMKKNV+D ND  AS  D ++EL GK VS+QLI
Sbjct: 12  FEKVCGSNSKKSKDREDESQKIEGRVVLMKKNVMDLNDSKASLIDSVYELVGKHVSLQLI 71

Query: 76  SAVNPDPENDLRGKHGKVAFLESWVKKITPMAAQETEFNITFDWDESMAVPGAFIIRNHH 135
           SA + DPEN+L GK GK   L+ W      + A+ETEF +TFDW+E M VPGA  + NHH
Sbjct: 72  SATHADPENNLGGKIGKATCLQKWNCTGPAITARETEFAVTFDWEEGMGVPGALRVSNHH 131

Query: 136 HSQLYLKTVTLEDVPGHGRVH 156
           HS+ YL +VTLEDVPG GR+H
Sbjct: 132 HSEFYLSSVTLEDVPGQGRIH 152


>GSVIVT01016738001 assembled CDS
          Length = 927

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 34  RFKIKGKVVLMKKNVLDFNDVTASCFDRIHELFGKGVSIQLISAVNPDPENDLRGKHGKV 93
           +FK++  + + KKN  D  +      D + +  G+ V ++LIS    DP+     K    
Sbjct: 80  KFKVRAVLTVKKKNKEDLKETLVKHLDSLTDKIGRNVVLELIS-TEIDPKTRAPRK-STP 137

Query: 94  AFLESWVKKITPMAAQETEFNITFDWDESMAVPGAFIIRNHHHSQLYLKTVTLE 147
           A ++ W KK T + A+   +   F  D +   PGA  + N H  + +L+++T+E
Sbjct: 138 AVVKDWSKK-TNIKAERVNYTAEFTVDSNFGDPGAITVTNKHQKEFFLESITIE 190