Jatropha Genome Database

JcCA0283321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283321.10 - phase: 0 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014066001 assembled CDS                                       100   3e-22

>GSVIVT01014066001 assembled CDS
          Length = 420

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/118 (51%), Positives = 69/118 (58%), Gaps = 6/118 (5%)

Query: 2   MSMTCRSIDFGRTLLDLAACGCSSNASIDRYSVRNYAKFASXXXXXXXXXXXXXXXXXXV 61
           MS+ CRS+DFG T  DL ACGCSSNA  DR+S RN AK  S                  +
Sbjct: 1   MSVACRSLDFGPTGFDLVACGCSSNAQFDRFSRRNSAKGVSKSSSRGYAAKKMVYCQRRI 60

Query: 62  S-----STKTPETLPNGVAQGPVTLLDL-KESKGPISLKNLFEVVADDLQTLNHNLRS 113
                 ST+ PETL NGV QGP   LD+ KES   ISL + FEVVADDLQ LN NL+S
Sbjct: 61  GRCRVFSTRAPETLLNGVGQGPPPALDVKKESSSSISLASFFEVVADDLQILNQNLQS 118