Jatropha Genome Database

JcCA0283211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283211.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033319001 assembled CDS                                       272   1e-73

>GSVIVT01033319001 assembled CDS
          Length = 1112

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/232 (61%), Positives = 176/232 (75%), Gaps = 5/232 (2%)

Query: 17   DVNNFDDCVAAFLLQRAFNMYEFEDVRKLAAELCGRIHPQVLFPIVSSLLEDAAKCEDVL 76
            D+N+ + CVA  LL RA   +EFEDVRKLAAELCGRIHPQVL PI+SS LE AA  +D++
Sbjct: 777  DINDHE-CVAMLLLNRALGKFEFEDVRKLAAELCGRIHPQVLLPILSSHLELAADSQDIV 835

Query: 77   IIKACLFAICTSLVVRGRESVSHPIIIQIRKTIETVLLWPSLDGDEVSKAQHGCIDCLAL 136
             IKACLF++CTSLV RGR+S+S P +++I+KTI+T+LLWPSLDGDEVSKAQHGCIDCLAL
Sbjct: 836  KIKACLFSVCTSLVARGRDSLSQPAMLKIQKTIKTILLWPSLDGDEVSKAQHGCIDCLAL 895

Query: 137  MICAELPNLESFKN--SEKFSLLGKTSYAGWYLIPRNSILAYVIHQLTSDKNEVPVCT-L 193
            MIC EL   +SF    S+K S++GK  + G   +  +S++ YVIHQL+ D  E    + L
Sbjct: 896  MICTELQAPKSFIGSVSDKISIIGKNFHPGDSALG-DSVVTYVIHQLSLDAVEAASTSML 954

Query: 194  TSENCEHDAPVLCSFRLCMANVLLSACQKLSDSGKKLFARETLPRLISSVEV 245
             S+NC  +  V  SFRLCMANVL+SACQK+SDSGKK FAR  LP LI  V+V
Sbjct: 955  CSDNCASEPSVPLSFRLCMANVLISACQKISDSGKKAFARRILPYLIHFVQV 1006