Jatropha Genome Database

JcCA0282511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0282511.10 + phase: 0 
         (605 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007771001 assembled CDS                                       763   0.0  
GSVIVT01013722001 assembled CDS                                       196   4e-50
GSVIVT01035693001 assembled CDS                                       133   2e-31
GSVIVT01035686001 assembled CDS                                        86   5e-17
GSVIVT01013718001 assembled CDS                                        84   2e-16
GSVIVT01035702001 assembled CDS                                        64   2e-10
GSVIVT01015390001 assembled CDS                                        54   3e-07

>GSVIVT01007771001 assembled CDS
          Length = 602

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/603 (64%), Positives = 438/603 (72%), Gaps = 28/603 (4%)

Query: 3   VSFADSRKQDSPTPLNPFSPKASLIRYWNKHISNSLPNPPFLFSKASPLTAIDSAFFSKL 62
           V FA+ +   S T  NPF+ KASLIRYWNK ISN LP P FL SKASPL A+DSA  +KL
Sbjct: 28  VCFAEGK---SSTGGNPFTAKASLIRYWNKQISNKLPKPSFLLSKASPLNAVDSAVLTKL 84

Query: 63  ATHNXXXXXXXXXXXXANLFCSFDSKAELANHNKDANFALYSNKRFSNYGGSRSGGVDSF 122
           AT N            ANLFC FDS        KDANFA YSN+ F+NYG SR GGVDSF
Sbjct: 85  ATQNALSSHLSSFCSSANLFCVFDSSPTSEKQVKDANFAFYSNRGFANYGDSRIGGVDSF 144

Query: 123 KNYSNGLNSVTDSFIKYSRDGTGHSETFTNYAADANVXXXXXXXXXXXXXXXXXEFKNYD 182
           KNYS+GLN  + SF +YS D T H E FT+YA D NV                 EF NYD
Sbjct: 145 KNYSDGLNMPSGSFRRYSGDSTDHHEEFTSYARDGNVATGSFAGYGSGATGGSGEFTNYD 204

Query: 183 DRVNVPGLRFTTYDSDGNNHKLSFSHYSGETNSGSQTFTSYGKKGNAVPSEFINYSEDSN 242
             VNVP L FTTYD +GNNHKL+F+ Y+ +TNSG+++FTSYGK G  VP+EF +Y ++SN
Sbjct: 205 PLVNVPHLEFTTYDPNGNNHKLTFAAYTDDTNSGTESFTSYGKNGKNVPAEFTSYGDNSN 264

Query: 243 IIDSTFTGYGELGNVANDSFTGYGVSGNNPHTNFKSYGAGENAASDSFSNYRNGANVGQD 302
           II STFT YG+L N  NDSF  YG S NNPH NFKSY  G NAA+D+FSNYR+GANVG D
Sbjct: 265 IIGSTFTAYGQLANSQNDSFKAYGHSSNNPHNNFKSYSLGGNAATDTFSNYRDGANVGDD 324

Query: 303 SFQSYAKNANAGKVSFTNYGKTFNPGNDTFKEYGKGSKGLTTVGFKIYGPDRSFKEYMDK 362
           SFQSYA+++N+ +V+F NYG+TFN GNDTFKEYGKG     T                  
Sbjct: 325 SFQSYARSSNSAEVNFANYGRTFNVGNDTFKEYGKGRASSNTT----------------- 367

Query: 363 GVSFSGYTNTSSVSGSFVNHRWVEPGKFFRESMLKQGNVMVMPDITDKMPKRSFLPRSIV 422
                     ++ SG  VN RWVEPGKFFRESMLK+GNVMVMPDI D+MP+RSFLPR I 
Sbjct: 368 -------ATATTASGISVN-RWVEPGKFFRESMLKEGNVMVMPDIRDRMPERSFLPRVIA 419

Query: 423 SKLPFSSSNLSELKQIFHAPENSTMERVINNALAECERTPSRGETKRCLGSIEDMVDFAV 482
           SKLPFSSS L ELK IFHA +NSTME VI NAL ECER PSRGETKRC+GS+EDM+DFAV
Sbjct: 420 SKLPFSSSRLQELKDIFHARDNSTMEHVIANALEECERAPSRGETKRCVGSVEDMIDFAV 479

Query: 483 SVLSHNVVVRTTENVHGSKKNVTIGTVKGINGGAVTKSVSCHQSLYPYLLYYCHSVPKVR 542
           SVL H+VVVRTTE   GSK+ V +G V+GINGG VT+SVSCHQSLYPYLLYYCHSVPKVR
Sbjct: 480 SVLGHDVVVRTTETTRGSKQRVMVGEVRGINGGKVTRSVSCHQSLYPYLLYYCHSVPKVR 539

Query: 543 VYEAEILEVESKAKINVGVAICHIDTSAWSPDHGAFVALGSSPGQIEVCHWIFENDMTWT 602
           VYE +IL+VE K K+N GVAICHIDTSAWS  HGAFVALGSSPG IEVCHWIFENDMTWT
Sbjct: 540 VYEVDILDVERKEKMNKGVAICHIDTSAWSQSHGAFVALGSSPGLIEVCHWIFENDMTWT 599

Query: 603 IAD 605
            +D
Sbjct: 600 TSD 602


>GSVIVT01013722001 assembled CDS
          Length = 272

 Score =  196 bits (497), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/225 (46%), Positives = 132/225 (58%), Gaps = 2/225 (0%)

Query: 18  NPFSPKASLIRYWNKHISNSLPNPPFLFSKASPLTAIDSAFFSKLATHNXXXXXXXXXXX 77
           NPF+PKA+L+RYWNK I + L    FL S+ASPL+A++SA F+KLA  N           
Sbjct: 34  NPFTPKAALVRYWNKQIGSDLQKSTFLLSRASPLSAVESATFTKLAAQNALSNYLPAFCK 93

Query: 78  XANLFCSFDSKAELANHNKDANFALYSNKRFSNYGGSRSGGVDSFKNYSNGLNSVTDSFI 137
            ANLFC  D    L  H  ++NFA+YSNK F+NYG    GG DSFKNY++      DSF 
Sbjct: 94  SANLFCFPDLGQSLEKHGPNSNFAVYSNKNFTNYGTGGHGGTDSFKNYTDYF--PVDSFR 151

Query: 138 KYSRDGTGHSETFTNYAADANVXXXXXXXXXXXXXXXXXEFKNYDDRVNVPGLRFTTYDS 197
           +YSRD  GH++ F NY  + N                  EFK Y +  NVP +RF +Y S
Sbjct: 152 RYSRDSAGHNDNFDNYGPEGNTMDLSFNGYGSGATRGVGEFKKYSEESNVPNVRFNSYSS 211

Query: 198 DGNNHKLSFSHYSGETNSGSQTFTSYGKKGNAVPSEFINYSEDSN 242
           DGN  K SF  YS E+N+G Q FTSYGK     P+EF +Y E++N
Sbjct: 212 DGNTRKQSFRSYSTESNAGDQYFTSYGKNSQGSPNEFTSYGENTN 256



 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 12/132 (9%)

Query: 218 QTFTSYGKKGNAVPSEFINY------------SEDSNIIDSTFTGYGELGNVANDSFTGY 265
           + FT+YG  G+     F NY            S DS   +  F  YG  GN  + SF GY
Sbjct: 122 KNFTNYGTGGHGGTDSFKNYTDYFPVDSFRRYSRDSAGHNDNFDNYGPEGNTMDLSFNGY 181

Query: 266 GVSGNNPHTNFKSYGAGENAASDSFSNYRNGANVGQDSFQSYAKNANAGKVSFTNYGKTF 325
           G         FK Y    N  +  F++Y +  N  + SF+SY+  +NAG   FT+YGK  
Sbjct: 182 GSGATRGVGEFKKYSEESNVPNVRFNSYSSDGNTRKQSFRSYSTESNAGDQYFTSYGKNS 241

Query: 326 NPGNDTFKEYGK 337
               + F  YG+
Sbjct: 242 QGSPNEFTSYGE 253


>GSVIVT01035693001 assembled CDS
          Length = 330

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 13/217 (5%)

Query: 388 GKFFRESMLKQGNVMVM--PDITDKMPKRSFLPRSIVSKLPFSSSNLSELKQIFHAPENS 445
           G FF ++ L  G  MV+  P  T++     FLPR +   +PFSS  L E+       E S
Sbjct: 88  GNFFLQTDLHPGTKMVLQLPQTTNE---AMFLPRQVADSIPFSSKKLPEILNRLSVKEKS 144

Query: 446 TMERVINNALAECERTPSRGETKRCLGSIEDMVDFAVSVLSHNVVVRTTENVHGSKKNVT 505
               ++   + +CE     GE++ C  S+E ++DF+ S L  NV V T E   GS++   
Sbjct: 145 AEAELMKKEIEKCEEPAMDGESRFCATSLESLIDFSTSKLGRNVNVLTNEVRMGSQEFEF 204

Query: 506 IGTVKGINGGAVTKSVSCHQSLYPYLLYYCHSVPKVRVYEAEIL-EVESKAKINVGVAIC 564
              +K +      KSV CH+  YPY ++YCH+  K R Y   ++ +  SKAK    +A C
Sbjct: 205 GVRMKKV----ADKSVVCHKMNYPYAVFYCHTFAKTRTYMIPLVGDDGSKAK---AMAAC 257

Query: 565 HIDTSAWSPDHGAFVALGSSPGQIEVCHWIFENDMTW 601
           H DTSAW P H AF  L   PG + +CH++  N M W
Sbjct: 258 HSDTSAWHPQHVAFQVLKIKPGTVPICHFLHNNAMVW 294


>GSVIVT01035686001 assembled CDS
          Length = 102

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 519 KSVSCHQSLYPYLLYYCHSVPKVRVYEAEILEVESKAKINVGVAICHIDTSAWSPDHGAF 578
           KSV CH+  YPY ++YCH++   RVY    +  E   K  V V+ CHIDTSAW+P H AF
Sbjct: 18  KSVVCHKQKYPYAVFYCHAIHNTRVYTLPFVGTEDGTKSEVVVS-CHIDTSAWNPKHAAF 76

Query: 579 VALGSSPGQIEVCHWIFENDMTW 601
             L   PG + VC ++  +D+ W
Sbjct: 77  KVLKVKPGTVPVCDFLPHDDIIW 99


>GSVIVT01013718001 assembled CDS
          Length = 125

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 52/85 (61%)

Query: 18  NPFSPKASLIRYWNKHISNSLPNPPFLFSKASPLTAIDSAFFSKLATHNXXXXXXXXXXX 77
           NPF+P+ASL+RYWNK I + LP   FL SKASPL+A++SA F+KLA  N           
Sbjct: 41  NPFTPRASLLRYWNKQIGSGLPKSTFLLSKASPLSAVESATFTKLAAQNALSDNLPAFCK 100

Query: 78  XANLFCSFDSKAELANHNKDANFAL 102
            ANL C  D    L  H+  +NFAL
Sbjct: 101 SANLLCFPDLGQSLEKHDASSNFAL 125


>GSVIVT01035702001 assembled CDS
          Length = 566

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 519 KSVSCHQSLYPYLLYYCHSVPKVRVYEAEILEVESKAKINVGVAICHIDTSAWSPDHGAF 578
           KSV CHQ  YPY + +CH++   ++Y      V +       VA+CH DTS W P    F
Sbjct: 435 KSVVCHQLNYPYAVAFCHTLHMTKIYMVP--SVGADGTGVEAVAVCHRDTSTWDPKALVF 492

Query: 579 VALGSSPGQIEVCHWIFENDMTWT 602
             L   PG + +CH++    + W 
Sbjct: 493 QRLKVKPGTLPICHFLPNGHIVWV 516


>GSVIVT01015390001 assembled CDS
          Length = 228

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query: 416 FLPRSIVSKLPFSSSNLSELKQIFHAPENSTMERVINNALAECERTPSRGETKRCLGSIE 475
            LPR +   +PFSS+  S++   F     S     +   + ECE     GE K C  S+E
Sbjct: 141 LLPRHVAETIPFSSNEFSDILNRFSVEPGSAEALEMKKTIEECEVPAMEGEDKYCATSLE 200

Query: 476 DMVDFAVSVLSHNVVVRTTE 495
            MVD++ S L  NV V  TE
Sbjct: 201 AMVDYSTSKLGKNVKVMATE 220