Jatropha Genome Database

JcCA0282441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0282441.10 + phase: 2 /pseudo/partial
         (279 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006264001 assembled CDS                                       270   5e-73
GSVIVT01016639001 assembled CDS                                       251   2e-67
GSVIVT01006728001 assembled CDS                                       114   4e-26

>GSVIVT01006264001 assembled CDS
          Length = 225

 Score =  270 bits (690), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 134/227 (59%), Positives = 150/227 (66%), Gaps = 23/227 (10%)

Query: 53  TSCWSSTSRIQKWLEKHGMNASQAYQYFVLRAQKIALSHGYEIINWEETFNNFGNKLSRK 112
           + CW+ T  I+KWL +HG++ S AYQYFVLRAQKIALSHGYEIINWEETFN+FG+KLSRK
Sbjct: 22  SGCWTETPHIRKWLRQHGLDTSGAYQYFVLRAQKIALSHGYEIINWEETFNDFGSKLSRK 81

Query: 113 TVVHNXADPLTDHREIHYLVCSAYNFPCRLXXXXXXXXXXXXLRCIVSNQDKWYLDHLDT 172
           TVVHN                        L            LRCIVSNQDKWYLDHLD 
Sbjct: 82  TVVHN-----------------------WLGGGVAEKVVAAGLRCIVSNQDKWYLDHLDA 118

Query: 173 SWEKFYMNEPLANINDTEQQQLVIGGEVCMWGEMVDGSDIEQTIWPRAAAAAERLWTPYD 232
            WE FYMNEPL NI + +QQ+L++GGEVCMWGE +D SDIEQTIWPRAAAAAERLW+ YD
Sbjct: 119 PWEGFYMNEPLTNITNHQQQKLILGGEVCMWGEHIDASDIEQTIWPRAAAAAERLWSAYD 178

Query: 233 KLAKDPTHVTRRLAHFRCLLNQXXXXXXXXXXXXXXXXXXXXSCYSQ 279
            LAKDP+ V  RLAHFRCLLNQ                    SCY Q
Sbjct: 179 NLAKDPSQVFGRLAHFRCLLNQRGVAAAPLVGPGRVAPEEPGSCYKQ 225


>GSVIVT01016639001 assembled CDS
          Length = 541

 Score =  251 bits (642), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/256 (48%), Positives = 156/256 (60%), Gaps = 25/256 (9%)

Query: 1   GKGYPSLWPSKDCKQPLDVSNEFTFKVIDGILSDFSXXXXXXXXHLGGDEVDTSCWSSTS 60
           G GYP LWPS  C++PLDVS EFTF ++ GIL+D          HLGGDEV+T CW+ST 
Sbjct: 283 GTGYPDLWPSPSCREPLDVSKEFTFDMVSGILTDMRKIFPFELFHLGGDEVNTDCWNSTP 342

Query: 61  RIQKWLEKHGMNASQAYQYFVLRAQKIALSHGYEIINWEETFNNFGNKLSRKTVVHNXAD 120
            +Q+WL+ H M   +AYQYFVLRAQ+IA+S  +  +NWEETFN F   L+ +TV+HN   
Sbjct: 343 HVQQWLQDHNMTPKEAYQYFVLRAQEIAISKNWAPVNWEETFNTFATNLNPRTVIHNWLG 402

Query: 121 PLTDHREIHYLVCSAYNFPCRLXXXXXXXXXXXXLRCIVSNQDKWYLDHLDTSWEKFYMN 180
           P          VC                      RCI SNQ  WYLDHLD  W+ FY  
Sbjct: 403 P---------GVCP--------------KAVAKGFRCIYSNQGVWYLDHLDVPWDGFYNA 439

Query: 181 EPLANINDTEQQQLVIGGEVCMWGEMVDGSDIEQTIWPRAAAAAERLWTPYDKLAKDPTH 240
           EPL  IN   +Q+LV+GGEVCMW E+ D S++ QTIWPRAAAAAERLW+  +  +     
Sbjct: 440 EPLEGINSASEQELVLGGEVCMWSEVADTSNVLQTIWPRAAAAAERLWSKREATSGKNIT 499

Query: 241 VTR--RLAHFRCLLNQ 254
           +T   RL ++RCLL +
Sbjct: 500 LTALPRLHYYRCLLTR 515


>GSVIVT01006728001 assembled CDS
          Length = 119

 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 67/92 (72%), Gaps = 6/92 (6%)

Query: 53  TSCWSSTSRIQKWLEKHGMNASQAYQYFVLRAQKIALSHGYEIINWEETFNNFGNKLSRK 112
           + CW+ T  I+KWL +HG++ S AYQYFVLRAQKIALSHGYEIINWEETFN+FG+KLSRK
Sbjct: 22  SGCWTETPHIRKWLRQHGLDTSGAYQYFVLRAQKIALSHGYEIINWEETFNDFGSKLSRK 81

Query: 113 TVVHNXADPLTD------HREIHYLVCSAYNF 138
           TVVHN  D +        H  I+++ C  Y  
Sbjct: 82  TVVHNWYDLIVTCIICIFHYGINFIFCHKYTL 113