Jatropha Genome Database

JcCA0282311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0282311.10 + phase: 0 /pseudo
         (72 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021520001 assembled CDS                                        89   4e-19
GSVIVT01038078001 assembled CDS                                        89   6e-19
GSVIVT01016712001 assembled CDS                                        64   1e-11
GSVIVT01016714001 assembled CDS                                        64   2e-11

>GSVIVT01021520001 assembled CDS
          Length = 372

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/45 (86%), Positives = 41/45 (91%)

Query: 2  EITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
          EITNV EYE IA+ KLPKM FDYYASGAEDQWTL+ENRNAFSRIL
Sbjct: 5  EITNVTEYEAIAKAKLPKMAFDYYASGAEDQWTLRENRNAFSRIL 49


>GSVIVT01038078001 assembled CDS
          Length = 371

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/46 (84%), Positives = 43/46 (93%)

Query: 1  MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
          MEITNV EYE IA+QKLPKMVFDYYASGAEDQWTL +NR+AFS+IL
Sbjct: 1  MEITNVTEYEAIAKQKLPKMVFDYYASGAEDQWTLYQNRHAFSQIL 46


>GSVIVT01016712001 assembled CDS
          Length = 364

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 2  EITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRI 45
          E  NV E++E+ARQ LPKM +D++A GAEDQ TL+EN  AFSRI
Sbjct: 4  EPVNVNEFQELARQALPKMYYDFFAGGAEDQHTLRENVEAFSRI 47


>GSVIVT01016714001 assembled CDS
          Length = 364

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 2  EITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRI 45
          E  NV E++E+ARQ LPKM +D+++ GAEDQ TL+EN  AFSRI
Sbjct: 4  EPVNVNEFQELARQSLPKMYYDFFSGGAEDQHTLRENVEAFSRI 47