Jatropha Genome Database

JcCA0281391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281391.10 + phase: 0 
         (230 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009979001 assembled CDS                                        55   2e-08
GSVIVT01022918001 assembled CDS                                        50   7e-07

>GSVIVT01009979001 assembled CDS
          Length = 595

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 35  SPGSAPHVVIVMDALREFTIEPLRWALE------NIMAAGGVVTLLGIMPWLNIPLSSMT 88
           SP     V+I  DA ++   + ++  ++      +I+  G  + + G++  +  P+   T
Sbjct: 3   SPSLPSRVLIAYDATKDLGNDEIQVTIKEVRMRGDILRRGDTLVVFGVLHKIQHPMGYHT 62

Query: 89  PEVWAVTLEELRVAQEILGYDLRMNSKYLKLQQVVDLCKTFDVVLHKVVVMGFPLRLMVV 148
             +  V+     V +      + +N    KL      C+   V +   V  G P++ +++
Sbjct: 63  LALAPVSSNRAMVEEVSKKVHMYVN----KLLPSAQECEDEGVDIEVKVTAGTPIKQVIL 118

Query: 149 EKLTAFHPTWVVFDKHLKRNREFFARTIPCSMVMMNENGEADMIRGQ 195
           +++ A+  TWV+FD+HL+R+   +   IP  + ++ +N    ++R Q
Sbjct: 119 QEIVAYKTTWVIFDRHLRRDLRNYINQIPSKVALIQDNLSVKVLRSQ 165


>GSVIVT01022918001 assembled CDS
          Length = 363

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 42  VVIVMDALR-EFTIEPLRWALENIMAAGGVVTLLGIMPWLNIPLSSM-------TPEVWA 93
           V++VMDA R + +++ + WAL++++     V +LGI+  L    S         T  +W 
Sbjct: 16  VIVVMDANRSKASVDAVCWALKHVVRPKDTVVVLGILCELGRKTSCFPFHMGMGTAGIWE 75

Query: 94  ---VTLEELRVAQEILGYDLRMNSKYLKLQQVVDLCKTFDVVLHKVVVMGFPLRLMVVEK 150
              ++  E+   +     + +       LQ +   C+  +V L   +  GF  + + +E+
Sbjct: 76  RLELSGSEVNPKELEEEIEKKREQYQSSLQPIYRQCRKNEVKLEVKLAAGFDAKKITIEE 135

Query: 151 LTAFHPTWVVFDKHLKRNREFFARTIPCSMVMM 183
               +  W+V D HLK+ + F    + C++ +M
Sbjct: 136 AQNSNTRWIVLDSHLKKEKVFIYGQVDCNIAVM 168