Jatropha Genome Database

JcCA0281241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281241.10 - phase: 0 /partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003941001 assembled CDS                                       181   9e-47

>GSVIVT01003941001 assembled CDS
          Length = 678

 Score =  181 bits (458), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 92/102 (90%)

Query: 1   APSMRQLHLHVISQDFNSDNLKNKKHWNSFTTAFFRDSVDVIEEIRNHGKATLKDDDSYL 60
           APSMRQLHLHVISQDFNS +LKNKKHWNSF +AFFRDSVDVIEEI NHG+AT+K +DS L
Sbjct: 568 APSMRQLHLHVISQDFNSKHLKNKKHWNSFNSAFFRDSVDVIEEITNHGRATIKGEDSQL 627

Query: 61  STELRCHRCRSAHPNIPRLKSHIKNCRAPFPPILLENCRLVL 102
           S ELRCHRCRSAHPN+PRLKSHI NC+A FPP LL+N RLVL
Sbjct: 628 SMELRCHRCRSAHPNMPRLKSHISNCQASFPPSLLQNDRLVL 669