Jatropha Genome Database

JcCA0281201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.10 - phase: 0 /partial
         (374 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028196001 assembled CDS                                       481   e-136

>GSVIVT01028196001 assembled CDS
          Length = 448

 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/326 (71%), Positives = 266/326 (81%), Gaps = 6/326 (1%)

Query: 35  ENRCKFWLTRKNRFCANGRLNDSPFCGNHKSRSDGQWIPCPIDPSHSVLKENLDGHVTRC 94
           ENRC FWL +K RFCAN R+NDS FCGNH +RSD +W+PCPIDPSHSVL ENL+GH+ RC
Sbjct: 2   ENRCSFWLPKKKRFCANFRINDSVFCGNHNTRSDAEWVPCPIDPSHSVLSENLEGHMKRC 61

Query: 95  PLLKQTQCLSLQPFYQKGINAGK--EEEEDITSEMKRNAIYGMTVSEFCKLIKKIESIHA 152
           PLLKQ Q LS QPFYQKGINA       E+ TS MKRNA+Y MTV EF  LI KI+SIH+
Sbjct: 62  PLLKQAQSLSSQPFYQKGINAAPTLASLENATSLMKRNAVYSMTVPEFSILISKIQSIHS 121

Query: 153 LICKDIVESYKMPEACNVWIRREIDRKLPFQEKHVKQQASILGNLEDFGALKSYS---EK 209
            I  DI +SY++PEAC++WI+RE+DRKLPFQEKHV QQASILGNLE+FG L+  S   + 
Sbjct: 122 SIRNDIRDSYRVPEACDIWIKREVDRKLPFQEKHVVQQASILGNLEEFGVLEKSSGDDQM 181

Query: 210 EQCDGE-GLYLDNAAPAVVEFGAGRGYLTQMLADCYGIQMVFLVERKSYKLKADRSLRQK 268
           EQCD +     DN  PAVVEFGAGRGYLTQMLADCYGI+ VFLVERKSYKLKADRSLRQK
Sbjct: 182 EQCDSDRSSGDDNGVPAVVEFGAGRGYLTQMLADCYGIKRVFLVERKSYKLKADRSLRQK 241

Query: 269 DNLTLERLRIDIEDLNLNAVESLLGLPFLAIGKHLCGPATDLTLRCCLPEQSSETTMEKC 328
           ++L LERLRIDIEDLNL AVESL G+P+LAIGKHLCGPATDL+LRCCL E+S++    +C
Sbjct: 242 ESLILERLRIDIEDLNLKAVESLQGVPYLAIGKHLCGPATDLSLRCCLAEESNQDDAVQC 301

Query: 329 SVNHSLKGLAIATCCHHLCQWKHYTS 354
              H L+GLAIATCCHHLCQWKHY +
Sbjct: 302 CSGHYLRGLAIATCCHHLCQWKHYIN 327