Jatropha Genome Database

JcCA0280911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280911.10 - phase: 0 
         (203 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000730001 assembled CDS                                       237   3e-63
GSVIVT01011075001 assembled CDS                                       231   2e-61
GSVIVT01021945001 assembled CDS                                       100   5e-22
GSVIVT01000731001 assembled CDS                                        88   2e-18
GSVIVT01021951001 assembled CDS                                        81   3e-16
GSVIVT01004486001 assembled CDS                                        71   3e-13
GSVIVT01018600001 assembled CDS                                        66   1e-11
GSVIVT01034583001 assembled CDS                                        59   1e-09
GSVIVT01000732001 assembled CDS                                        57   5e-09

>GSVIVT01000730001 assembled CDS
          Length = 192

 Score =  237 bits (604), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 145/192 (75%), Gaps = 14/192 (7%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLSL+EHT            ++AIK ELE++FLDK         VI+NLGLCIS+YD+
Sbjct: 1   MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDK---------VIANLGLCISVYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
           R+I+GGF+FPGDGASTYTV+FR+V+FRPFVGE I AKLKES  +GLRLSLGFFDDI+IP 
Sbjct: 52  RSIDGGFVFPGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPV 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQ--Q 178
           H +P PCH  PN EK+ +V WIWDY   ++  F IDGIDEI+F+V SV YPP+P+EQ  +
Sbjct: 112 HLMPNPCHCEPNPEKKGQVIWIWDY---QEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKE 168

Query: 179 EKPFAPMMITVS 190
            KPFAPM+I  S
Sbjct: 169 SKPFAPMVIMGS 180


>GSVIVT01011075001 assembled CDS
          Length = 192

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 144/192 (75%), Gaps = 14/192 (7%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MF+LSL+EHT            ++AIK ELE++FLDK         V++NLGLCIS+YD+
Sbjct: 1   MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDK---------VLANLGLCISVYDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
           R+I+GGF+FPGDGASTYTV+FR+V+FRPFVGE I AKLKES  +GL+LSLGFFDDI+IP 
Sbjct: 52  RSIDGGFVFPGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPV 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQ--Q 178
           H +P PCH  P+ E + +V WIWDY   ++  F IDG+DEI+F+V SV YPP+P+EQ  +
Sbjct: 112 HLMPNPCHCEPDPENKSQVIWIWDY---QEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKE 168

Query: 179 EKPFAPMMITVS 190
            KPFAPMMI  S
Sbjct: 169 SKPFAPMMIMGS 180


>GSVIVT01021945001 assembled CDS
          Length = 101

 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 69/107 (64%), Gaps = 9/107 (8%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MF+LSL+EHT             +AIK ELE++FLDK         VI+NLGLCI + D+
Sbjct: 1   MFFLSLIEHTLQLSPHLLDLPLSEAIKGELESLFLDK---------VIANLGLCIFVNDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLR 107
           R+   GF+F G+  STYTV+FR+V+FR FV E I AKL +S  +GLR
Sbjct: 52  RSTACGFVFLGNSTSTYTVEFRLVMFRLFVKEIITAKLNKSNVNGLR 98


>GSVIVT01000731001 assembled CDS
          Length = 189

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 55/68 (80%), Gaps = 9/68 (13%)

Query: 23  DDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDLRNIEGGFIFPGDGASTYTVKFR 82
           ++ IK ELE+ FLDK         VI+NLGLC+S+YD+R+I+G F+FPGDGASTYTV+FR
Sbjct: 118 NETIKGELESQFLDK---------VIANLGLCVSVYDIRSIDGDFVFPGDGASTYTVEFR 168

Query: 83  MVVFRPFV 90
           +V+FRPFV
Sbjct: 169 LVMFRPFV 176


>GSVIVT01021951001 assembled CDS
          Length = 195

 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 67/118 (56%), Gaps = 20/118 (16%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MF+LSL+EHT             +AIK ELE++FLDK         V++NLGLCI + D+
Sbjct: 1   MFFLSLIEHTLRLSPHLLDLPLSEAIKGELESLFLDK---------VVANLGLCIFVNDI 51

Query: 61  RNIEGGFIFPGDGASTYTVKFR-----------MVVFRPFVGETIVAKLKESKEDGLR 107
           R+I+GGF+FPGD AST  +K +           +V+F  FV + I AKLK      L+
Sbjct: 52  RSIDGGFVFPGDSASTCILKSKIWFSYFIYLGLLVMFGLFVKDIITAKLKRIGRQWLK 109


>GSVIVT01004486001 assembled CDS
          Length = 299

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 9/80 (11%)

Query: 1  MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
          MF+LSL+EHT            ++A+K E E++FLDK         +I NLGLCIS+YD+
Sbjct: 1  MFFLSLIEHTVQLRPHLLDLPLNEAVKGEFESLFLDK---------IIVNLGLCISVYDM 51

Query: 61 RNIEGGFIFPGDGASTYTVK 80
          R+I+GG +FP DG   + +K
Sbjct: 52 RSIDGGLVFPRDGVLLFLIK 71


>GSVIVT01018600001 assembled CDS
          Length = 112

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 46/60 (76%), Gaps = 5/60 (8%)

Query: 136 RDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQQE--KPFAPMMITVSSSF 193
           + +V WI D   N++  F IDGI++I+F+V SV Y PVP+EQ++  KPFAPM+I+VSSSF
Sbjct: 14  KSQVIWIQD---NQEQKFPIDGINKIRFQVQSVSYSPVPVEQRKESKPFAPMVISVSSSF 70


>GSVIVT01034583001 assembled CDS
          Length = 95

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 5/56 (8%)

Query: 136 RDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQQE--KPFAPMMITV 189
           R +V WI   P N++  F IDGID+I+F+V SV Y PVP+EQ++  KPFA M+I++
Sbjct: 21  RSQVIWI---PDNQEQKFPIDGIDKIRFQVQSVSYSPVPIEQRKESKPFASMVISL 73


>GSVIVT01000732001 assembled CDS
          Length = 79

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 5/59 (8%)

Query: 134 EKRDEVTWIWDYPGNEDAVFSIDGIDEIKFKVDSVKYPPVPLEQ--QEKPFAPMMITVS 190
             R +V WI D   N++  F IDGID+I+F+V SV Y PVP+EQ  + KPFAPM+I  S
Sbjct: 12  NSRSQVIWIRD---NQEQKFPIDGIDKIRFQVQSVSYSPVPVEQPKESKPFAPMVILGS 67