Jatropha Genome Database

JcCA0280821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280821.10 + phase: 0 /partial
         (201 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033305001 assembled CDS                                       276   4e-75
GSVIVT01014778001 assembled CDS                                       214   3e-56
GSVIVT01015589001 assembled CDS                                       184   3e-47
GSVIVT01007597001 assembled CDS                                       166   8e-42
GSVIVT01002784001 assembled CDS                                       152   8e-38
GSVIVT01034980001 assembled CDS                                       113   6e-26
GSVIVT01028143001 assembled CDS                                       111   2e-25
GSVIVT01007681001 assembled CDS                                       107   3e-24
GSVIVT01032425001 assembled CDS                                       105   1e-23
GSVIVT01004662001 assembled CDS                                       100   9e-22

>GSVIVT01033305001 assembled CDS
          Length = 792

 Score =  276 bits (707), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 164/221 (74%), Gaps = 26/221 (11%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTL 60
           PGRPTRDCLF DPARDGTSLLKIWNVNKC+GVVGVFNCQGAGWCK+EKKTR+HD SP TL
Sbjct: 578 PGRPTRDCLFADPARDGTSLLKIWNVNKCSGVVGVFNCQGAGWCKIEKKTRVHDTSPDTL 637

Query: 61  TASVRATDVDCIAQIAGTDWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFCPI 120
           T SV A DVD IA +AGT+W G+ VVYAY+SGE++RLP+GAS+PVTLKVLE+E+FHFCP+
Sbjct: 638 TGSVCAADVDQIAHVAGTNWKGDVVVYAYKSGEVVRLPEGASLPVTLKVLEFEVFHFCPL 697

Query: 121 KQIACNISFAPIGLLDMFNASGAVDKFEIHS-----------------ASDKKP---ELF 160
           K+IA NISFAPIGLLDM N+ GAV++FE  S                  S ++P   ++ 
Sbjct: 698 KEIATNISFAPIGLLDMLNSGGAVEQFENRSPTATIALTARGCGRFGAYSSQRPLKCQVG 757

Query: 161 DGEVSSELTTSLGENRSPTATITLKPVPEEEMYRWPVEIQI 201
           D EV      + G       T T+ P+PEEEMYRW + IQ+
Sbjct: 758 DAEVEFSYDPNNG-----LLTFTI-PIPEEEMYRWSIAIQV 792


>GSVIVT01014778001 assembled CDS
          Length = 758

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/221 (48%), Positives = 143/221 (64%), Gaps = 25/221 (11%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTL 60
           PGRPTRDCLF DPARDG SLLKIWN+N  +GVVGVFNCQGAGWC+V KK  IHD  PGT+
Sbjct: 543 PGRPTRDCLFSDPARDGISLLKIWNLNDFSGVVGVFNCQGAGWCRVGKKNLIHDEQPGTI 602

Query: 61  TASVRATDVDCIAQIAGTDWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFCPI 120
           T  +RA DVD + ++A   WNG+T+++++  GE++ LPK AS+P+TLK  EYE+F   P+
Sbjct: 603 TGVIRAKDVDYLPRVADDGWNGDTIIFSHLGGEVVYLPKNASIPMTLKSREYEVFTVVPV 662

Query: 121 KQIACNISFAPIGLLDMFNASGAVDK--------------------FEIHSASDKKPELF 160
           K ++   +FAPIGL+ MFN+ GA+ +                    F ++S+S  K  + 
Sbjct: 663 KALSNGATFAPIGLIKMFNSGGAIKELKYERERNATVGMKVRGSGIFGVYSSSRPKRIIV 722

Query: 161 DGEVSSELTTSLGENRSPTATITLKPVPEEEMYRWPVEIQI 201
           D E   E+     E  S   TI LK +PEEEMY W + I++
Sbjct: 723 DTE---EMKFEY-EEGSGLTTINLK-IPEEEMYLWNITIEL 758


>GSVIVT01015589001 assembled CDS
          Length = 422

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/155 (55%), Positives = 110/155 (70%), Gaps = 3/155 (1%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTL 60
           PGRPTRDCLF DPARDG SLLKIWN+NK TGV+GV+NCQGA W   E+K   H+   G +
Sbjct: 202 PGRPTRDCLFSDPARDGISLLKIWNMNKYTGVIGVYNCQGAAWNSAERKNTFHETHSGAI 261

Query: 61  TASVRATDVDCIAQIAGTD--WNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFC 118
           T ++R  DV  IA+ A TD  W+G+  VY ++SGELI LP  A++PV+LKVLE+E+    
Sbjct: 262 TGTIRGRDVHLIAE-AATDPEWSGDCAVYCHKSGELITLPHNAALPVSLKVLEHEILTVT 320

Query: 119 PIKQIACNISFAPIGLLDMFNASGAVDKFEIHSAS 153
           PIK +A   SFAP GL++MFNA GA+ +    + S
Sbjct: 321 PIKVLAPGFSFAPFGLINMFNAGGAIQELRYENRS 355


>GSVIVT01007597001 assembled CDS
          Length = 750

 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 106/150 (70%), Gaps = 2/150 (1%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAG-W-CKVEKKTRIHDASPG 58
           PGRPTRDCLF DP  DG SLLKIWN+NK +GVVGVFNCQGAG W  K  +   +  ++P 
Sbjct: 535 PGRPTRDCLFKDPVMDGESLLKIWNLNKLSGVVGVFNCQGAGNWPMKDAEAVPVLASTPT 594

Query: 59  TLTASVRATDVDCIAQIAGTDWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFC 118
            L+  V   DV+ + Q+AG +W G++ VYA+ SG L RL K A++ V+L VL+ E+F  C
Sbjct: 595 FLSGHVSPLDVEYLDQVAGDNWRGDSAVYAFYSGSLSRLSKKANLEVSLAVLKCEIFTIC 654

Query: 119 PIKQIACNISFAPIGLLDMFNASGAVDKFE 148
           P++ +  N+ FAPIGLLDM+N+ GAV+  E
Sbjct: 655 PVRVLGQNLQFAPIGLLDMYNSGGAVEALE 684


>GSVIVT01002784001 assembled CDS
          Length = 739

 Score =  152 bits (385), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/156 (49%), Positives = 103/156 (66%), Gaps = 3/156 (1%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAG-WCKVEKKTRIHDASPGT 59
           PGRP+RDCLF DP  DG SLLKIWN+NK TGV+GVFNCQGAG W  ++   +  D SP  
Sbjct: 527 PGRPSRDCLFNDPVMDGESLLKIWNLNKVTGVIGVFNCQGAGSWPCLDNPVQ-KDVSP-K 584

Query: 60  LTASVRATDVDCIAQIAGTDWNGETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFCP 119
           L+  V   D++   ++A T W G+  V+++++G L RLPK  S  V LK+LE ++F   P
Sbjct: 585 LSGQVSPADIEYFEEVAPTPWTGDCAVFSFKAGSLSRLPKRGSFDVKLKILECDVFTVSP 644

Query: 120 IKQIACNISFAPIGLLDMFNASGAVDKFEIHSASDK 155
           IK     + FA IGL+DM+N+ GAV+  E  +ASD 
Sbjct: 645 IKVYHGKVHFAAIGLIDMYNSGGAVETVEALNASDN 680


>GSVIVT01034980001 assembled CDS
          Length = 347

 Score =  113 bits (282), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           PTRDCLF +P  DG +LLKIWN+NK +GVVGVFNCQGAGW   E K + +      ++ S
Sbjct: 177 PTRDCLFENPLFDGKTLLKIWNLNKFSGVVGVFNCQGAGWYPEEHKCKAYPQCYKAMSGS 236

Query: 64  VRATDVDCIAQIAGTDWNG--ETVVYAYRSGELIRLPKGASVPVTLKVLEYELFHFCPIK 121
           V + DV+   + +  ++ G  E  VY  +   L  +     + +TL    +E+F   P+ 
Sbjct: 237 VSSDDVEWEQKASTAEFRGADEFAVYLNKCDNLRLVKPKEQINITLLPSTFEIFTISPVH 296

Query: 122 QIACNISFAPIGLLDMFNASGAVDKFEIHSASDKKPEL 159
           ++     FA IGL +MFN+ GA++  E  +     PEL
Sbjct: 297 KLRKGSKFAGIGLENMFNSGGAIEGMEFENRPIFAPEL 334


>GSVIVT01028143001 assembled CDS
          Length = 792

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 89/152 (58%), Gaps = 3/152 (1%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           PTRDCLF +P  D  ++LKIWN+NK  GV+G FNCQGAGW   E++ + +      ++ S
Sbjct: 577 PTRDCLFKNPLFDSKTILKIWNLNKYGGVIGAFNCQGAGWDPKEQRIKGYSECYKPMSGS 636

Query: 64  VRATDVDCIAQIAGTDWN--GETVVYAYRSGELIRL-PKGASVPVTLKVLEYELFHFCPI 120
           V  T+++   +I  T      E  VY  ++ EL  + P+     +T++   +E+F + PI
Sbjct: 637 VHVTNIEWDQKIEATGMGEAEEFAVYLDQAEELFLVTPRSDPTQITIQPSTFEIFSYVPI 696

Query: 121 KQIACNISFAPIGLLDMFNASGAVDKFEIHSA 152
           K++     FAPIGL +MFN+ G + + E + +
Sbjct: 697 KKLGPTAKFAPIGLTNMFNSGGTLQELEYNES 728


>GSVIVT01007681001 assembled CDS
          Length = 780

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 25/168 (14%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           P+RDCLF DP  DG ++LKIWN+NK TGV+G FNCQG GWC+  ++ +         +AS
Sbjct: 565 PSRDCLFQDPLHDGKTMLKIWNLNKYTGVLGAFNCQGGGWCRETRRNK---------SAS 615

Query: 64  VRATDVDCIAQIA-GTDWNGET-----------VVYAYRSGELIRLPKGASVPVTLKVLE 111
             +  V C+A  +   +W+               VY ++   +  L    S+ ++L   +
Sbjct: 616 EYSRTVSCLANPSKDIEWSAGKSPISTKDVDLFAVYMFQEKTMKLLKPSESLEISLDPFK 675

Query: 112 YELFHFCPIKQIACN----ISFAPIGLLDMFNASGAVDKFEIHSASDK 155
           +EL    P+K +  N    I FAP GL++M N  GAV+  E+    D+
Sbjct: 676 FELLTVSPVKVLPRNNNNSIQFAPFGLVNMLNGGGAVEWVELDEDEDR 723


>GSVIVT01032425001 assembled CDS
          Length = 775

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 5/149 (3%)

Query: 4   PTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAGWCKVEKKTRIHDASPGTLTAS 63
           PTR CLF DP  DG ++LKIWN+NK TGV+G FNCQG GWC+  ++ +        +T+ 
Sbjct: 562 PTRGCLFEDPLHDGNTMLKIWNLNKFTGVLGAFNCQGGGWCREARRNKCASQFSHAVTSV 621

Query: 64  VRATDVDCIAQIAGTDWNGETV----VYAYRSGELIRLPKGASVPVTLKVLEYELFHFCP 119
               D++     + T  + E V    +Y +R+ +L+      ++ ++L   ++EL    P
Sbjct: 622 ASPKDIEWRNGNSSTPISIEGVQLFAMYMFRTKKLVLSKPSQNIEISLDPFDFELITVSP 681

Query: 120 IKQI-ACNISFAPIGLLDMFNASGAVDKF 147
           +  +   ++ FAPIGL++M N+ GA++  
Sbjct: 682 VTTLPGKSVQFAPIGLVNMLNSGGAIESL 710


>GSVIVT01004662001 assembled CDS
          Length = 244

 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query: 1   PGRPTRDCLFVDPARDGTSLLKIWNVNKCTGVVGVFNCQGAG-WCKVEKKTRIHDASPGT 59
           PGRP+RDCLF DP  DG SLLKIWN+NK TGV+GVFNCQGAG W  ++   +  D SP  
Sbjct: 107 PGRPSRDCLFNDPVMDGESLLKIWNLNKVTGVIGVFNCQGAGSWPCLDNPVQ-KDVSP-K 164

Query: 60  LTASVRATDVDCIAQIAGTDWNGETVVYAYRSGEL 94
           L+  V   D++   ++A T W G+  V+++++G++
Sbjct: 165 LSGQVSPADIEYFEEVAPTPWTGDCAVFSFKAGKI 199