Jatropha Genome Database

JcCA0280621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280621.10 + phase: 0 /pseudo/partial
         (238 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007750001 assembled CDS                                        76   1e-14

>GSVIVT01007750001 assembled CDS
          Length = 523

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 67/89 (75%), Gaps = 3/89 (3%)

Query: 122 KVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLSVANHPKQTYVNGKADSDLRSVRSS 181
           +V+EMKSMS AI KLEG  N+ GR  L  QED T  +    K   VNGKA+ D RSVRSS
Sbjct: 255 QVQEMKSMSNAIRKLEGPNNSTGR--LIQQED-TRGLMTTSKHLNVNGKAEFDSRSVRSS 311

Query: 182 SPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
           SPP S+EPSVAPHPKSY+EIMAMVQRGE+
Sbjct: 312 SPPASSEPSVAPHPKSYLEIMAMVQRGEK 340