Jatropha Genome Database

JcCA0279561.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279561.20 - phase: 2 /partial
         (200 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000472001 assembled CDS                                        94   4e-20
GSVIVT01000469001 assembled CDS                                        90   5e-19
GSVIVT01000468001 assembled CDS                                        84   5e-17
GSVIVT01000461001 assembled CDS                                        80   5e-16
GSVIVT01000464001 assembled CDS                                        74   5e-14
GSVIVT01028891001 assembled CDS                                        62   1e-10
GSVIVT01028889001 assembled CDS                                        59   1e-09
GSVIVT01010312001 assembled CDS                                        51   3e-07

>GSVIVT01000472001 assembled CDS
          Length = 458

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 22  LSTFMLSFAYTFVCIATAKM-----LEKEGKIXXXXXXXXXXXXXPPIPENCFGNFVTGN 76
           +S+  ++ +YT+ C+A A+      +++                 PP+PEN FGN +   
Sbjct: 270 VSSLTVACSYTWACVAKARARSSDEVDENELQHFVFPVDCRARLNPPLPENYFGNCLAPC 329

Query: 77  GI-LKEVEPLFKESGINFVVEKL---IDKIEELNKGVLEGAKGKLANMLKGMESSTFGVA 132
            + +K  + +  E G    V  +   + K  +  +GVL GA+  L+++    +  T G +
Sbjct: 330 FVAIKSTQLIDDEDGFVAAVNAMGEALGKTLQNEEGVLRGAEKWLSDLESLNKERTLGAS 389

Query: 133 GSPKFKLYDIDFGWRRPKKVEIVSIDRNGAISMVESKDESGGVEIGLVLKKHEMEMFNSL 192
            SPKF +Y+IDFG+ R +K E++SID   +IS+ E K   G +E+G+ L K  M++F S+
Sbjct: 390 ASPKFAVYNIDFGFGRLQKREMISIDETNSISLHEGKTNMGDIEVGVALPKMTMDVFASI 449

Query: 193 FVNGI 197
           F NG+
Sbjct: 450 FANGL 454


>GSVIVT01000469001 assembled CDS
          Length = 393

 Score = 90.1 bits (222), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 89/186 (47%), Gaps = 37/186 (19%)

Query: 22  LSTFMLSFAYTFVCIATAKM----------LEKEGKIXXXXXXXXXXXXXPPIPENCFGN 71
           +S+F ++ AYT+ CI  A++          LE  G +             PP+PEN F N
Sbjct: 231 VSSFTVTCAYTWTCIVKAQVWSGEEVSENELEHFGFVADCRACLD-----PPLPENYFAN 285

Query: 72  FVTGNGILKEVEPLFKESGINFVVEKLIDKIEELNKGVLEGAKGKLANMLKGMESSTFGV 131
            + G  I                 EKL  K     KGVLEG    + N          GV
Sbjct: 286 LI-GEAI----------------QEKLGSK-----KGVLEGLDKWVVNFSSINIERAVGV 323

Query: 132 AGSPKFKLYDIDFGWRRPKKVEIVSIDRNGAISMVESKDESGGVEIGLVLKKHEMEMFNS 191
           AGSP+F +YDIDFG  + +K E +SID   +IS++E KD    +E+GL   K +M+ F S
Sbjct: 324 AGSPRFSVYDIDFGLGQLQKREFISIDETRSISLLEGKDNKSDIEVGLSFPKIKMDAFAS 383

Query: 192 LFVNGI 197
           +F NG+
Sbjct: 384 IFTNGL 389


>GSVIVT01000468001 assembled CDS
          Length = 499

 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 27/181 (14%)

Query: 22  LSTFMLSFAYTFVCI--ATAKMLEKEGKIXXXXXXX---XXXXXXPPIPENCFGNFVTGN 76
           +S+F ++ AY + C+  A AK  E  G+                 PPIP N F   + G 
Sbjct: 339 VSSFTVACAYVWDCMGKARAKSGEDVGENEPEHLAFVGGCRAYFDPPIPANYFAKTI-GE 397

Query: 77  GILKEVEPLFKESGINFVVEKLIDKIEELNKGVLEGAKGKLANMLKGMESSTFGVAGSPK 136
            I                 E+L  K     +GVL+ A+  ++      E    GVAGSP+
Sbjct: 398 AIQ----------------ERLRKK-----EGVLKDAEKWISEFETRKEDRIVGVAGSPR 436

Query: 137 FKLYDIDFGWRRPKKVEIVSIDRNGAISMVESKDESGGVEIGLVLKKHEMEMFNSLFVNG 196
           F +YDIDFG  +PKK E+VSID  G+IS+ E K++    EIGL L K +M+ F  +F NG
Sbjct: 437 FAVYDIDFGLGKPKKSEVVSIDMTGSISLNECKNDKESFEIGLSLPKIKMDAFEDIFANG 496

Query: 197 I 197
            
Sbjct: 497 F 497


>GSVIVT01000461001 assembled CDS
          Length = 491

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 1   KKLRQKVISTLDGENQIKTDILSTFMLSFAYTFVCIATAKMLEKEGK-----IXXXXXXX 55
           ++L++ VI  +  ++ +     S F +  AY + C+  A+    E               
Sbjct: 288 QRLKKWVIPQIPKQSHV-----SAFTVICAYVWSCMIKARSRSGEDVGENELEHFAFTAD 342

Query: 56  XXXXXXPPIPENCFGNFVTGNGILKEVEPLFKESGINFVVEKLIDKIEELNK---GVLEG 112
                 PPIP   FGN + G     +   L +E G     + + + I E  +   GVL+G
Sbjct: 343 CRTLLDPPIPAAYFGNCLMGGLATTKSTRLIQEDGFIVAAKSIREAIHERVRNKGGVLKG 402

Query: 113 AKGKLANMLKGMESSTFGVAGSPKFKLYDIDFGWRRPKKVEIVSIDRNGAISMVESKDES 172
            +  ++++          V GSP+F++Y++DFG+ RPKK E++S DR    ++   KD  
Sbjct: 403 VQQWVSDLKSLNRMRMAAVVGSPRFQVYNVDFGFGRPKKYEVISRDR--YFTLDGCKDNE 460

Query: 173 GGVEIGLVLKKHEMEMFNSLFVNGI 197
              EIGL   K +M+ F  +F NG+
Sbjct: 461 EDFEIGLCFPKAKMDAFAEIFTNGL 485


>GSVIVT01000464001 assembled CDS
          Length = 156

 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 2/136 (1%)

Query: 64  IPENCFGNFVTGNGILKEVEPLFKESGI-NFVVEKLIDKIEELNKGVLEGAKGKLANMLK 122
           + EN   +F+        ++P   E+   N + E + +K+   NKGVLEG    + N   
Sbjct: 19  VSENELEHFIFVADCRAHLDPTLPENYFANLIGEAIQEKLGS-NKGVLEGLDKWVVNFSS 77

Query: 123 GMESSTFGVAGSPKFKLYDIDFGWRRPKKVEIVSIDRNGAISMVESKDESGGVEIGLVLK 182
                  GVAGSP F +Y IDFG  + +K E +SID    IS+ E KD  G +E+GL   
Sbjct: 78  INIKRAVGVAGSPGFAVYGIDFGLGQLQKRESISIDETRCISLHEGKDNKGDIEVGLSFP 137

Query: 183 KHEMEMFNSLFVNGIL 198
           K +M  F S+F +G++
Sbjct: 138 KIKMNAFASIFTDGLM 153


>GSVIVT01028891001 assembled CDS
          Length = 487

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 20/203 (9%)

Query: 3   LRQKVISTLDGE-NQIKTDI----------LSTFMLSFAYTFVCIATAKMLEKEGKIXXX 51
           LR+++    + + NQIK+ +           STF     + ++ +  A+ L+ E      
Sbjct: 275 LRERIFRFSESQINQIKSTLNKTPSDGSKPFSTFQSLSTHVWLAVTRARQLKPEDVTVYT 334

Query: 52  XXXXXXXXXXPPIPENCFGNF------VTGNGILKEVEPLFKESGINFVVEKLIDKIEEL 105
                     PP+PE+ FGN       VT  G+L    P F  + I   +     K+  +
Sbjct: 335 VFADCRKRVDPPMPESYFGNLIQAIFTVTAAGLLYANPPEFAAAMIQKAIVTHDAKV--I 392

Query: 106 NKGVLEGAKGKLANMLKGMESSTFGVAGSPKFKLYDIDFGWRRPKKVEIVSIDR-NGAIS 164
           NK   +     +    K    +   V  SP+FK+YD+DFG+ +P++V   S +R +G + 
Sbjct: 393 NKRNDDWESNPIIFQFKDAGVNCVAVGSSPRFKVYDVDFGFGKPERVRSGSNNRFDGMVY 452

Query: 165 MVESKDESGGVEIGLVLKKHEME 187
           + + K   G +++ + L+   ME
Sbjct: 453 LYQGKTGVGSIDMEISLEAGAME 475


>GSVIVT01028889001 assembled CDS
          Length = 715

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 85/189 (44%), Gaps = 9/189 (4%)

Query: 6   KVISTLDGENQIKTDILSTFMLSFAYTFVCIATAKMLEKEGKIXXXXXXXXXXXXXPPIP 65
           +V STL+      +   S+F     + ++ +  A+ L+ E                PP+P
Sbjct: 423 RVKSTLNKTPSDGSRPFSSFQSLSTHVWLAVTRARQLKPEDVTVYTVFANCRKRVDPPMP 482

Query: 66  ENCFGNF------VTGNGILKEVEPLFKESGINFVVEKLIDKIEELNKGVLEGAKGKLAN 119
           E+ FGN       VT  G+L    P F  + I   +  + +  + +N+   +     +  
Sbjct: 483 ESYFGNLIQAIFTVTAAGLLYANPPEFAAAMIQKAI--VTNDAKAINERNDKWESNPIIF 540

Query: 120 MLKGMESSTFGVAGSPKFKLYDIDFGWRRPKKVEIVSIDR-NGAISMVESKDESGGVEIG 178
             K    +   V  SP+FK+YD+DFG+ +P++V   S ++ +G + + + K   G +++ 
Sbjct: 541 QFKDAGVNCVTVGSSPRFKVYDVDFGFGKPERVRSGSNNKFDGMVYLYQGKTGGGSIDVE 600

Query: 179 LVLKKHEME 187
           + L+   ME
Sbjct: 601 ITLEAGTME 609


>GSVIVT01010312001 assembled CDS
          Length = 431

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 62  PPIPENCFGNFVTGNGILKEVEPLFKESGINFVVEKLIDKIEELN----KGVLEGAKG-- 115
           PP+PEN FGN +    I +      KE   + +V ++ + IE+++    K + EG K   
Sbjct: 283 PPLPENSFGNII-WFAITRPCIDGMKEGKRHALVNQMREAIEKIDGDYIKKLPEGIKHLN 341

Query: 116 ----KLANMLKGMESSTFGVAGSPKFKLYDIDFGWRRPKKVEIVSIDRNGAISMVESKDE 171
               +   + KG E  +F      +F +Y+ DFGW +PK V   S+     +  ++S   
Sbjct: 342 FLKERAERVTKG-EIESFRFTSFCRFPVYEADFGWGKPKWVGSGSLPFKNLVIFIDSSGT 400

Query: 172 SGGVEIGLVLKKHEMEMFN 190
           +GG+E  + L + +M+ F 
Sbjct: 401 NGGIEAWINLVEEDMDKFQ 419