Jatropha Genome Database

JcCA0279201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279201.20 - phase: 0 /partial
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018598001 assembled CDS                                       147   3e-36
GSVIVT01018606001 assembled CDS                                        98   3e-21
GSVIVT01018608001 assembled CDS                                        97   8e-21
GSVIVT01018607001 assembled CDS                                        97   8e-21
GSVIVT01018604001 assembled CDS                                        78   3e-15
GSVIVT01028041001 assembled CDS                                        60   7e-10
GSVIVT01015019001 assembled CDS                                        49   1e-06

>GSVIVT01018598001 assembled CDS
          Length = 198

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 115/164 (70%), Gaps = 6/164 (3%)

Query: 36  AYIETSCRGTRYPALCVQYLSRFSNSTIQNQQELVQVALSASLCRASYTRSYMLKVAKEL 95
           ++I+  C  TRYPALCVQ LS ++++  ++ ++L   AL+ SL +A   ++++ K+ K +
Sbjct: 34  SFIKAKCSATRYPALCVQSLSVYASTIQKSPKQLAHTALTVSLAKAQSAKAFVSKLGK-I 92

Query: 96  QAKKAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNVETWTSS 155
           +  KA+E + V+DCL+++NDS+ +LS+S++E+   G+ +    G D  WH+SNV+TW S+
Sbjct: 93  KGMKARELEAVQDCLEEMNDSIDRLSRSVQELEEAGKSK----GQDFLWHMSNVDTWVSA 148

Query: 156 ALSDASYCVDAFPGRRM-SKLKATIKGRVMNVAQATSNALTLFH 198
           AL+D + CVD F GR +  ++KA+I+G ++ VAQ TSNAL L +
Sbjct: 149 ALTDDNTCVDGFAGRALDGRVKASIRGWLVTVAQVTSNALALVN 192


>GSVIVT01018606001 assembled CDS
          Length = 201

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 93/164 (56%), Gaps = 11/164 (6%)

Query: 37  YIETSCRGTRYPALCVQYLSRFSNSTIQNQQELV-QVALSASLCRASYTRSYMLKVAKEL 95
           +I TSC  T YP LC   LS  + S IQ   +L+   AL+ +L  A  T S M K+ +  
Sbjct: 40  FIRTSCGTTTYPKLCYTSLSAHA-SVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQS- 97

Query: 96  QAKKAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNVETWTSS 155
              K +E   + DC+++++DSV QL +++ E+ ++        G +    +++++TW S+
Sbjct: 98  HGLKPREVAAMHDCVEELSDSVDQLRKAMGEMTQIK-------GSNFGLMMNDIQTWVSA 150

Query: 156 ALSDASYCVDAFPGRRMS-KLKATIKGRVMNVAQATSNALTLFH 198
           AL+D   C D F G  M+  LK T++ RV+N+A  TSNAL L +
Sbjct: 151 ALTDEDTCTDGFAGNAMNGNLKTTVRARVVNMAHMTSNALGLIN 194


>GSVIVT01018608001 assembled CDS
          Length = 202

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 11/164 (6%)

Query: 37  YIETSCRGTRYPALCVQYLSRFSNSTIQNQQELV-QVALSASLCRASYTRSYMLKVAKEL 95
           +I TSC  T YP LC   LS  + S IQ   +L+   AL+ +L  A  T S M K+ +  
Sbjct: 41  FIRTSCGTTTYPRLCYTSLSAHA-SVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQS- 98

Query: 96  QAKKAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNVETWTSS 155
              K +E   + DC+++++DSV QL +++ E+ ++        G +    + +++TW S+
Sbjct: 99  HGLKPREVAAMHDCVEELSDSVDQLRRAMGEMTQIK-------GSNFGLMMDDIQTWVST 151

Query: 156 ALSDASYCVDAFPGRRMS-KLKATIKGRVMNVAQATSNALTLFH 198
           AL+D   C D F G  M+  LK T++ R++N+A  TSNAL L +
Sbjct: 152 ALTDEDTCTDGFAGNAMNGNLKTTVRARIVNMAHMTSNALGLIN 195


>GSVIVT01018607001 assembled CDS
          Length = 202

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 11/164 (6%)

Query: 37  YIETSCRGTRYPALCVQYLSRFSNSTIQNQQELV-QVALSASLCRASYTRSYMLKVAKEL 95
           +I TSC  T YP LC   LS  + S IQ   +L+   AL+ +L  A  T S M K+ +  
Sbjct: 41  FIRTSCGTTTYPRLCYTSLSAHA-SVIQTSPKLLADTALAVTLSTARSTSSLMSKMVQS- 98

Query: 96  QAKKAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNVETWTSS 155
              K +E   + DC+++++DSV QL +++ E+ ++        G +    + +++TW S+
Sbjct: 99  HGLKPREVAAMHDCVEELSDSVDQLRRAMGEMTQIK-------GSNFGLMMDDIQTWVST 151

Query: 156 ALSDASYCVDAFPGRRMS-KLKATIKGRVMNVAQATSNALTLFH 198
           AL+D   C D F G  M+  LK T++ R++N+A  TSNAL L +
Sbjct: 152 ALTDEDTCTDGFAGNAMNGNLKTTVRARIVNMAHMTSNALGLIN 195


>GSVIVT01018604001 assembled CDS
          Length = 187

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 9/148 (6%)

Query: 37  YIETSCRGTRYPALCVQYLSRFSNSTIQNQQELVQVALSASLCRASYTRSYMLKVAKELQ 96
           +I TSC  T YP LC   LS  +N    + + L   ALS +L  A  T S M  +     
Sbjct: 39  FIRTSCGTTIYPRLCFTSLSAHANVIQTSPRLLADTALSVTLSTARSTSSVMSNLLLS-H 97

Query: 97  AKKAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNVETWTSSA 156
             K +E   +KDC+++++DSV QL +++ E+ ++        G +    +++++TW S+A
Sbjct: 98  GLKPREVVAMKDCVEELSDSVDQLRKAMGEMNQIK-------GSNFGLIMNDIQTWVSAA 150

Query: 157 LSDASYCVDAFPGRRM-SKLKATIKGRV 183
           L+    C D F G  M  KLK  ++ R+
Sbjct: 151 LTYEDTCTDGFAGNTMDGKLKKAVRTRI 178


>GSVIVT01028041001 assembled CDS
          Length = 549

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/159 (21%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 39  ETSCRGTRYPALCVQYLSRFSNSTIQNQQELVQVALSASLCRASYTRSYMLKVAKELQAK 98
            + C GT YP LCV  LS F +   +   E++   +S ++     + S    + ++L+  
Sbjct: 63  HSHCEGTLYPELCVSTLSTFPDLASKTVPEVIAATVSHTVGEVKLSASNCSGIRRKLKNL 122

Query: 99  KAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNVETWTSSALS 158
              E + + DCL+  + ++ QL  +I ++       +         H  +++T  S +++
Sbjct: 123 NTLEGRAINDCLELHDCTIAQLQSTISDLSHNNSPAK---------HYHDLQTLLSGSIT 173

Query: 159 DASYCVDAFPGRRMSKLKATIKGRVMNVAQATSNALTLF 197
           +   C+D F   +   ++++I+G + N++   SN+L + 
Sbjct: 174 NLYTCLDGFAYSK-KHIRSSIEGPLRNISHHVSNSLAML 211


>GSVIVT01015019001 assembled CDS
          Length = 537

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 10/138 (7%)

Query: 33  PARAYIETSCRGTRYPALCVQYLSRFSNSTIQNQ---QELVQVALSASLCRASYTRSYML 89
           P    I+ +C  T YP+LC   LS  + +T +N      ++++A++A++     + S  +
Sbjct: 57  PLHPLIKNACTNTLYPSLCFTTLSS-APATSKNTTTLHHILEIAVNATVSSVMDSGSD-I 114

Query: 90  KVAKELQAKKAKEYQVVKDCLDQINDSVQQLSQSIREIRRMGRQEEAAGGGDIFWHISNV 149
           K     Q   ++E   + DC++  + ++ +L Q+I ++            GD     +N+
Sbjct: 115 KALFTYQDLNSQEKNALNDCMEMTDQTLYELGQAIDDLHAF-----PPSIGDPHRLYTNL 169

Query: 150 ETWTSSALSDASYCVDAF 167
           +T  S+A+++ + C+D F
Sbjct: 170 KTLLSAAMTNENTCIDGF 187