Jatropha Genome Database

JcCA0279201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279201.10 - phase: 0 /partial
         (235 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027657001 assembled CDS                                       357   2e-99

>GSVIVT01027657001 assembled CDS
          Length = 1255

 Score =  357 bits (916), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/226 (77%), Positives = 198/226 (87%)

Query: 10  HGCKERVLQKYFLQEWKLVKSLLDDIVSNGRVSDLSSVHKIRSIMDKYQQEGQLLEPYLE 69
           HG KERVLQKYFL EW+LVKSLL+DIVS+GRVSD SSV KIRSIMDKYQ++GQLLEPYLE
Sbjct: 24  HGSKERVLQKYFLMEWELVKSLLNDIVSHGRVSDPSSVFKIRSIMDKYQEQGQLLEPYLE 83

Query: 70  SIVSPLMSIIRTKTIELGIASDEILQVIKPICIIIYCLVTVGGYKAVIKFFPHQVSNLEL 129
           SIVSPLM IIR+KT ELG++SDEIL+VIKP+CIIIY LVTV GYKAVIKFFPHQVS+LEL
Sbjct: 84  SIVSPLMFIIRSKTKELGVSSDEILEVIKPVCIIIYSLVTVCGYKAVIKFFPHQVSDLEL 143

Query: 130 AVALLDKCHDTASGTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTSIANNNDICK 189
           AV+LL+KCH+T + TSLR ESTGEMEAKC            PFDISSVDTSIAN+  + +
Sbjct: 144 AVSLLEKCHNTNAVTSLRHESTGEMEAKCVILLWLSILVLVPFDISSVDTSIANSKTLDE 203

Query: 190 LEPSPLVLRIMKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPMAFT 235
           LEP+PLVLRI+ FSKDYLSNAGPMRT+AGLLLS+LLTRPDMP AFT
Sbjct: 204 LEPAPLVLRILAFSKDYLSNAGPMRTIAGLLLSRLLTRPDMPKAFT 249