Jatropha Genome Database

JcCA0278741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278741.10 - phase: 0 /pseudo
         (313 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013506001 assembled CDS                                        61   8e-10
GSVIVT01013538001 assembled CDS                                        58   5e-09
GSVIVT01031694001 assembled CDS                                        52   3e-07
GSVIVT01031692001 assembled CDS                                        49   3e-06
GSVIVT01010911001 assembled CDS                                        48   5e-06

>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 58/320 (18%)

Query: 19  IVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRHLTMLNS 78
           ++DI L+LP+KS+ RFR   K W ++  D  F   H+     N+     L+F+HL+  +S
Sbjct: 25  LIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANS--NGRLLFKHLS--SS 80

Query: 79  ESLEKVVKQNDKTVDVDSNDLRIYKFSIPSK-DRLNVSCCCDGILCATISIMR------- 130
           E     ++ N    +V     R  +  +PSK D   +    +G++C T S  +       
Sbjct: 81  EQEIYSLRSNIAFAEV-----RRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLN 135

Query: 131 ILLWTPLVEDYKI*RVPVLRLILSCTMY*VLGMIRLLMITKLCM-FHPLQLILEDVRRLV 189
           + LW P + +++           +   Y +      LM+  L   FHP+    + VR + 
Sbjct: 136 LFLWNPAIREFQ-----------TLPKYHINNFTSPLMVVGLGFAFHPVINDYKVVRIVY 184

Query: 190 F*L*GPTRGDKFMMTSNFLRMIPQKQFL*MEVCTGLLF------------DSTDSRRNTI 237
           F     +  D + + +   R +       +       F            +  D+  N I
Sbjct: 185 FMRNKTSEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLI 244

Query: 238 IGFNLATEVFWEVLLP---------PSVTPSKGPLQLRPLNSCLSLSNNEEDDSFLEVWV 288
           + F++A +VF E++LP           +   KG L +   ++  S  N        +VWV
Sbjct: 245 LSFDMAKDVFKEIMLPDFGYDELIRKCLADYKGSLSVLFYDAYHSNEN-------CDVWV 297

Query: 289 LKDKK-QSAWSKFITIPYSI 307
           +++     +W+K  TI + I
Sbjct: 298 MEEYGVAKSWTKHFTIRHEI 317


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 59/316 (18%)

Query: 14  IADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRHL 73
           I + ++VDIL +LP+KS+ RFR   K W ++IS  +F  +H+        H+  +I    
Sbjct: 4   IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQ-----HKRPVI---- 54

Query: 74  TMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSCCCDGILCATISI----- 128
            ++   S++  + ++D  VD++          IP+K    V   C+G+LC          
Sbjct: 55  GLVVPHSVDDPLHKDDLAVDLE------LHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYS 108

Query: 129 ----MRILLWTPLVEDYKI*RVPVLRLILSCTMY*VLGMIRLLMITKLCMFHPLQLILED 184
                +++LW P          P      +C MY                + P     + 
Sbjct: 109 LKPPQKLILWNPSTRQCNHIPCPSFVGYQNC-MYSFF-------------YDPGSDDYKI 154

Query: 185 VRRLVF*L*GPTRGDKFMMTSNFLRMIPQKQFL*MEVCTGLLFDST------------DS 232
           VR   F     T  D F + +N  R + +     +   +   F+              + 
Sbjct: 155 VRIFTFLGKDKTGIDIFTLKTNKWRRVEETHSSVIGYWSATYFNGNLHWLAFRYGGYGED 214

Query: 233 RRNTIIGFNLATEVFWEVLLPPSVTPSKGPLQLRPLNSCLSLSNNEEDDSFLEVWVLKDK 292
            R++++ F+L  E F E+ LP      +    LR L  CL +     +D     WV+++ 
Sbjct: 215 ERSSMVAFSLREEKFQEMELP----SQRAVFGLRVLGGCLCVDGLYTNDK----WVMEEY 266

Query: 293 K-QSAWSKFITIPYSI 307
             + +W   I IPY +
Sbjct: 267 GIKESWKSLIAIPYRV 282


>GSVIVT01031694001 assembled CDS
          Length = 184

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 13  EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLI-FR 71
           E+   +I +ILL+LP+KS+ RFR   K W+++IS   F RSH    +  A  +  +I + 
Sbjct: 3   ELPLHIIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHFRLPQTQARTRLCIIDYS 62

Query: 72  HLTMLNSESLEKVVKQNDKTVDVDSNDLRI-YKFSIPS-KDRLNVSCCCDGILCATISIM 129
                +S  +    K  +   D D   L   Y F I   K  + +   CDG+LC      
Sbjct: 63  ERGDNHSMVVRASTKDCEAFSDNDGGSLAFDYLFDIGKFKHEVVLLDSCDGLLCIADLAN 122

Query: 130 RILLWTPLVEDYK 142
           +I+LW P    + 
Sbjct: 123 KIVLWNPSTRQFN 135


>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 129/313 (41%), Gaps = 46/313 (14%)

Query: 13  EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLI--- 69
           E+   +I +ILL+LP+KS+ R R   K W+++IS   F +SH+   +  A  Q   +   
Sbjct: 3   ELPLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLRLPQTQARTQFCTLNYG 62

Query: 70  -----FRHLTMLNSESLEKVVKQNDKTVDVDS-NDLRIYKFSIPSKDRLNVSCCCDGILC 123
                +  +   +++  E     N   +  D   D+  +K+ +   D       CDG+LC
Sbjct: 63  EPGDNYYLVVGASTKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDS------CDGLLC 116

Query: 124 ATISIMRILLWTPLVED-YKI*RVPVLRLILSCTMY*VLGMIRLLMITKLCMFHPLQLIL 182
                 +I+LW P      ++   P +   L C  +          +  + M +P    +
Sbjct: 117 LVDLANKIVLWNPSTRQCNQLPPNPNVLDFLGCHGFGYDSFADDYKVFLVSMLNPNFETV 176

Query: 183 EDVRRLVF*L*GPTRGDKFMMTSNFLRMIPQKQFL-*MEVCTGLLFDSTDSRR------- 234
            DV               F + SN  + I +K       +C  +L  +            
Sbjct: 177 VDV---------------FSLKSNKWKRIQEKHHTRAARMCATVLHGALHWVAYDPILGF 221

Query: 235 NTIIGFNLATEVFWEVLLPPSVTPSKGPLQLRPLNSCLSLSNNEEDDSFLEVWVLKDKK- 293
           +TI+ F+   E F E+ +P      +  ++LR +  CL +  +++     ++WV+K+   
Sbjct: 222 DTIMAFDFEKERFREMAIPRE--EEELYVKLRVVGGCLCVHGSKDPS---KMWVMKEYGV 276

Query: 294 QSAWSKFITIPYS 306
            ++WSK  + PY+
Sbjct: 277 DTSWSKMAS-PYN 288


>GSVIVT01010911001 assembled CDS
          Length = 415

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 16 DDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAP 63
           DL+ +I L+ P+K + RFRS SKRW S+ISD  F   H   +  + P
Sbjct: 36 GDLLTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRHARRSSASVP 83