Jatropha Genome Database

JcCA0278721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278721.10 + phase: 1 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024746001 assembled CDS                                       138   5e-34
GSVIVT01028311001 assembled CDS                                        57   2e-09

>GSVIVT01024746001 assembled CDS
          Length = 233

 Score =  138 bits (347), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 74/83 (89%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           CK+I  +VKDGLIEPEDI +SLIEQEL+TNC+EFP PDLLIRTSGELR+SNF+LWQ+AYT
Sbjct: 139 CKNIGYKVKDGLIEPEDINKSLIEQELQTNCTEFPFPDLLIRTSGELRVSNFMLWQIAYT 198

Query: 61  ELFFAEELWPDFGKEGFVEALTS 83
           EL F   LWPDFGK+ FVEAL+S
Sbjct: 199 ELCFFSTLWPDFGKDEFVEALSS 221


>GSVIVT01028311001 assembled CDS
          Length = 269

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 28/39 (71%)

Query: 35  PSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPDFG 73
           P PD+LIRTSGE R+SNFLLWQ  Y  L+    LWP+ G
Sbjct: 206 PDPDILIRTSGETRLSNFLLWQSQYCYLYSPSVLWPEIG 244