Jatropha Genome Database

JcCA0277981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277981.20 + phase: 0 /partial
         (192 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013472001 assembled CDS                                        56   9e-09

>GSVIVT01013472001 assembled CDS
          Length = 752

 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 16/86 (18%)

Query: 76  EPLDENLFSDLTLQTLTTESDSL--PTAATLQTATN-------SRQISRKKKKAASLRIG 126
           +PLDENLFSDLTL T     + L  P+   + T+T        SRQISRKKK+ ASLRIG
Sbjct: 53  QPLDENLFSDLTLITPNQFRNPLLDPSPTPISTSTTREETPSVSRQISRKKKR-ASLRIG 111

Query: 127 YGRGG----SSIDD--LPASPSEDQN 146
           YGR      S +DD  + +SPS+D +
Sbjct: 112 YGRDSLNQLSLVDDAEVQSSPSDDSH 137