Jatropha Genome Database

JcCA0277831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277831.10 - phase: 0 /partial
         (303 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029150001 assembled CDS                                       535   e-152

>GSVIVT01029150001 assembled CDS
          Length = 581

 Score =  535 bits (1378), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 250/290 (86%), Positives = 276/290 (95%)

Query: 10  PRRTVFLGVDVGTGSARAGLFNENGKLLGTASSPIQIWKERDCVEQSSTDIWHAICAAVK 69
           P R+V LGVDVGTGSARAGLF+E+GKLLG+ASSPIQIWK+ +C+EQSSTDIWHAICAAVK
Sbjct: 12  PLRSVLLGVDVGTGSARAGLFDEDGKLLGSASSPIQIWKDGNCIEQSSTDIWHAICAAVK 71

Query: 70  SACNLADVSGEEVTGIGFAATCSLVAVDSDGAPVSVSWSGDSRRNIIVWMDHRAVKQAEK 129
           +AC+LA+V+GEEV G+GFAATCSLVAVD+DG+PV+VS SGD+RRNIIVWMDHRAVKQAEK
Sbjct: 72  AACSLANVAGEEVAGLGFAATCSLVAVDADGSPVTVSLSGDTRRNIIVWMDHRAVKQAEK 131

Query: 130 INSSNSPVLQYCGGALSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRS 189
           INSS+SPVLQYCGG+LSPEMQPPKLLWVKENLQESW+M FRWMDLSDWL+YRATGDDTRS
Sbjct: 132 INSSSSPVLQYCGGSLSPEMQPPKLLWVKENLQESWTMAFRWMDLSDWLAYRATGDDTRS 191

Query: 190 LCTTVCKWTYLGHAHMHQINEKDSRDMEACGWDDDFWEEIGLGDLVDGHHAKIGRSVAFP 249
           LCTTVCKWTYLGHAHM QINEKDSR+MEACGWDDDFWEEIGLGDL+DGHHAKIGRSVAFP
Sbjct: 192 LCTTVCKWTYLGHAHMEQINEKDSRNMEACGWDDDFWEEIGLGDLIDGHHAKIGRSVAFP 251

Query: 250 GHALGSGLTPTAAKELGLVAGTPVGTSLIDAHAGGVGIMESALEADSDAK 299
           GH LGSGLTP AAKE+GL AGTPVGTSLIDAHAGGVG+MES    DS++K
Sbjct: 252 GHPLGSGLTPDAAKEMGLRAGTPVGTSLIDAHAGGVGVMESVAVPDSESK 301