Jatropha Genome Database

JcCA0277701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277701.10 - phase: 0 /pseudo/partial
         (465 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011103001 assembled CDS                                       249   1e-66

>GSVIVT01011103001 assembled CDS
          Length = 667

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/299 (49%), Positives = 181/299 (60%), Gaps = 11/299 (3%)

Query: 163 DFLEDIVEAAKNNKKTLFLAMESSMNMMRQVXXXXXXXXXXXXXXXSAGLDILKKVEELE 222
           DFLE+++E AKNNKKTLF +M+S MN+MR+V                 GL+IL +VEEL+
Sbjct: 375 DFLEEMIEDAKNNKKTLFSSMDSVMNIMREVELQEKAAQQAREEAARGGLEILTRVEELK 434

Query: 223 QMLRHAKEANDMHAGEIYGEKAILATEVRELQGRLLSLSDERDKALAILDEMNQXXXXXX 282
           +ML+HAKEAN MHAGE+YGEKAILATE RELQ RLLSLSDERDK+L ILDEM        
Sbjct: 435 EMLQHAKEANGMHAGEVYGEKAILATEARELQSRLLSLSDERDKSLKILDEMRHALEARL 494

Query: 283 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMDKVVQESKILQRQAEENSKLREFLVDRG 342
                                         IM+KVVQES +L+++AEENSKL+EFL+DRG
Sbjct: 495 AAAEEDIKAAEQVKFEKEESARKALAEQEAIMEKVVQESMMLKQEAEENSKLQEFLMDRG 554

Query: 343 HVVDTLQGEISVICQDVRLLKERFDENVPLSKSISSTQTXXXXXXXXXXXXXXXXXXXXX 402
           H+VD LQGEISVICQDV+ LK +FD+ VPLS+S+SS+QT                     
Sbjct: 555 HIVDMLQGEISVICQDVKFLKVKFDDRVPLSQSLSSSQTSCKLASSSSSLKSMSSDPVPV 614

Query: 403 XXXXXXXXXXXXEPRDTSKSPKERSPTSSIHDQSPKSQHEEDKRTDRKELLDEGWDFFE 461
                          D S++PK+ SPT+S+  QSPK   E   R D K LLD+GWD FE
Sbjct: 615 PALA-----------DESETPKQASPTASVGGQSPKKSPESGVRDDDKALLDDGWDLFE 662