Jatropha Genome Database

JcCA0277661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277661.10 - phase: 0 
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007403001 assembled CDS                                        67   7e-12

>GSVIVT01007403001 assembled CDS
          Length = 171

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 33/39 (84%)

Query: 168 ESYARIFFRNSVATGEIYPLESEVRICEECKTGDVVTIE 206
           ESYARIFFRNSV+TGE+YPLE+EVRICEEC+  D    E
Sbjct: 99  ESYARIFFRNSVSTGEVYPLETEVRICEECRRWDFRVCE 137



 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 35/61 (57%), Gaps = 11/61 (18%)

Query: 74  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYALIGLPASYETRFIEPGETKT 133
           FHGLCYVV DNIDTDQIIPAE +       AE     SYA I    S  T  + P ET+ 
Sbjct: 74  FHGLCYVVHDNIDTDQIIPAEAVV------AE-----SYARIFFRNSVSTGEVYPLETEV 122

Query: 134 K 134
           +
Sbjct: 123 R 123