Jatropha Genome Database

JcCA0275671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275671.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024030001 assembled CDS                                       313   5e-86

>GSVIVT01024030001 assembled CDS
          Length = 339

 Score =  313 bits (802), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 177/205 (86%), Gaps = 6/205 (2%)

Query: 35  YLSDE-SPRRHGQVDLSVFRDAVQDCLDHDAKPVHKSEKLKQARNSNDVQVEKYSGLRIR 93
           YLSD+ SP R  Q D+SVFR+AVQDCLD + + V K+  LK+    N+  VEK+SGLRIR
Sbjct: 28  YLSDDGSPTRTRQSDMSVFRNAVQDCLDFEPESVKKAPNLKK----NETDVEKFSGLRIR 83

Query: 94  NQLVTPAELSERLSDIRFVRLPAIKNLLVGDTLSGCWATIGVLTEKGNPRTSSVGKSYCI 153
           NQLV+  ELS + SDIRFVRL AIKNLLVGDTLSGCWAT+GVLTEKGNP+TSS GK+YCI
Sbjct: 84  NQLVSSVELSSQFSDIRFVRLSAIKNLLVGDTLSGCWATVGVLTEKGNPKTSSAGKNYCI 143

Query: 154 WKIGCLDENTISLFLFGDAYQQNCKEQAGTVFALFNCTVRRDNAG-GFSLSVYSPNQIIK 212
           WKIGCLDE+T+S+FLFGDAYQ+N KEQAGTVFALFNC+VR+D  G GFSLSVYSP QI+K
Sbjct: 144 WKIGCLDEDTVSVFLFGDAYQKNWKEQAGTVFALFNCSVRKDAMGNGFSLSVYSPGQILK 203

Query: 213 MGTSIDYGVCKGKRKDGMSCTVIIN 237
           +GTS+DYGVCKGKRKDGM+CT++IN
Sbjct: 204 LGTSVDYGVCKGKRKDGMACTLVIN 228