Jatropha Genome Database
- JcCA0275141.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0275141.10 - phase: 0 /partial
(197 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01019825001 assembled CDS 348 7e-97
GSVIVT01008825001 assembled CDS 185 1e-47
GSVIVT01008841001 assembled CDS 177 4e-45
GSVIVT01022436001 assembled CDS 105 1e-23
GSVIVT01026718001 assembled CDS 72 2e-13
GSVIVT01037357001 assembled CDS 52 1e-07
GSVIVT01015905001 assembled CDS 52 2e-07
GSVIVT01012968001 assembled CDS 51 4e-07
GSVIVT01018933001 assembled CDS 50 5e-07
GSVIVT01003880001 assembled CDS 48 4e-06
GSVIVT01003592001 assembled CDS 47 7e-06
GSVIVT01012956001 assembled CDS 47 8e-06
GSVIVT01034308001 assembled CDS 47 8e-06
GSVIVT01013291001 assembled CDS 46 1e-05
>GSVIVT01019825001 assembled CDS
Length = 330
Score = 348 bits (894), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 167/178 (93%), Positives = 173/178 (97%)
Query: 15 YDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 74
YD+PWVEKYRP K+ADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTS+LALAHEL
Sbjct: 10 YDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSVLALAHEL 69
Query: 75 LGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 134
LG NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP G HK+VILDEADSMT+GAQQA
Sbjct: 70 LGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQQA 129
Query: 135 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
LRRTMEIYSNSTRFALACN SSKIIEPIQSRCA+VRFSRLSDQEILGRLMVVVEAEKV
Sbjct: 130 LRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKV 187
>GSVIVT01008825001 assembled CDS
Length = 341
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 121/185 (65%), Gaps = 12/185 (6%)
Query: 18 PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
PWVEKYRP ++ D+ ++ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 78 N-YREAVLELNASDDRGIDVVRNKIKMFA---------QKKVTLPPGRHKLVILDEADSM 127
Y+ VLELNASDDRGI+VVR KIK FA Q PP +K++ILDEADSM
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPP--YKIIILDEADSM 127
Query: 128 TSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVV 187
T AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 128 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHIC 187
Query: 188 EAEKV 192
+ E++
Sbjct: 188 KEEEL 192
>GSVIVT01008841001 assembled CDS
Length = 360
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 118/177 (66%), Gaps = 2/177 (1%)
Query: 18 PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
PWVEKYRP +AD+ + D V + + + +P+L+L GPPGTGKT++ILA+A +L G
Sbjct: 38 PWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGE 97
Query: 78 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH--KLVILDEADSMTSGAQQAL 135
+ +LELNASDDRGIDVVR +I+ FA + + KLV+LDEAD+MT AQ AL
Sbjct: 98 QFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFAL 157
Query: 136 RRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
RR +E Y+ +TRFAL CN +KII +QSRC RF+ L + RL V+ AEK+
Sbjct: 158 RRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKL 214
>GSVIVT01022436001 assembled CDS
Length = 354
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 31/203 (15%)
Query: 19 WVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
WV+KYRP + +++ ++D L+ + + + P+L+ GPPG+GK T I+A+ ++ GP+
Sbjct: 3 WVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQMFGPS 62
Query: 79 YREAV---------------------------LELNASDDRGID--VVRNKIKMFAQKKV 109
+ +ELN D D +V+ IK A+ +
Sbjct: 63 ADKVKVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNRP 122
Query: 110 TLPPGR--HKLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCA 167
G+ ++++L+E D ++ AQ +LRRTME YS S R L CN+SSK+ E ++SRC
Sbjct: 123 IDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCL 182
Query: 168 LVRFSRLSDQEILGRLMVVVEAE 190
+R + ++++I L + + E
Sbjct: 183 NIRINAPTEEQITKVLEFIAKKE 205
>GSVIVT01026718001 assembled CDS
Length = 530
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Query: 16 DIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 75
D W +KYRP ++D + N D +LQ + + P+ I G G GK T I A E+
Sbjct: 230 DFTWADKYRPKALSDFICNRDKAVQLQDLVKVEQHPHFIFEGLAGVGKKTMISAFLREVF 289
Query: 76 GPN---YREAVLE--LNASDDRGIDV-VRNKIKMFAQKKVTLPPGRHKLVILDEADSMTS 129
G + RE E L R I V V+ ++ ++L EA+ +++
Sbjct: 290 GHDRVQTREECKEFYLKGESIRSIRVNVKVSCHHIESQQGCALLNIFTAIVLYEAEKLST 349
Query: 130 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEA 189
A + ++ Y +C+ +SK ++PI+S C +V+ SD+EI+ L ++ +
Sbjct: 350 EALLYFKWLLDKYEGHNMVFFSCSDTSK-LQPIKSLCTMVQLLPPSDEEIVEVLELIAKQ 408
Query: 190 EKVG 193
E +
Sbjct: 409 ESIN 412
>GSVIVT01037357001 assembled CDS
Length = 941
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 17 IPWVEKYRPNKIADIVGNEDTVSRL-QVIAR-------------------DGNMPNLILS 56
+ W EKY+P DI+GN+ V +L + +A G ++LS
Sbjct: 322 LTWTEKYKPKVPNDIIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLS 381
Query: 57 GPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVR----------NKIKMFAQ 106
G PG GKTTS L ++LG +E+NASD+RG + N IK
Sbjct: 382 GTPGIGKTTSA-KLVSQMLGFQ----AIEVNASDNRGKANAKIDKGIGGSNANSIKELVS 436
Query: 107 KK---VTLPPGRH--KLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTS--SKII 159
+ + +H ++I+DE D M++G + + + S + S+ +
Sbjct: 437 NEALGAHMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKL 496
Query: 160 EPIQSRCALVRFSRLSDQEILGRLMVVVEAE 190
+ + + C L+ F + + Q++ RL+ V AE
Sbjct: 497 KSLVNYCLLLSFRKPTKQQMAKRLLQVANAE 527
>GSVIVT01015905001 assembled CDS
Length = 397
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 8/178 (4%)
Query: 24 RPNKIADIVGNEDTVSRLQVI--ARDGN-MPNLILSGPPGTGKTTSILALAHELLGP-NY 79
RP + D+VG + +S ++ A D N +P++IL GPPGTGKT+ A+ + P +Y
Sbjct: 2 RPRTVDDVVGQDHLLSHKSLLRSAIDSNRLPSIILWGPPGTGKTSIAKAIVNSSSQPSSY 61
Query: 80 REAVLELNASDDRGI-DVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRT 138
R L + + + DVV K+ K + + L+ +DE Q +
Sbjct: 62 RFVSLSAVTAGVKDVRDVVEEARKIKVSKNMN---SKRTLLFVDEVHRFNKSQQDSFLPV 118
Query: 139 MEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKVGNLW 196
+E S A N S +I P+ SRC ++ + L + L V G W
Sbjct: 119 IEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLNRAVADTGRGLAW 176
>GSVIVT01012968001 assembled CDS
Length = 168
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 53 LILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
L+L GPPG GKTT LAH ++ +Y V+E+NASDDR + KI Q +
Sbjct: 31 LLLCGPPGLGKTT----LAH-VVAKHYGYRVVEINASDDRSSSTIEAKILDVVQMNFVMA 85
Query: 113 PGRHKLVILDEADSMTSGAQQALRRTMEIYS 143
+ +++DE D + A+ +++ S
Sbjct: 86 DSKPNCLVIDEIDGALGDGRGAVEVILKMVS 116
>GSVIVT01018933001 assembled CDS
Length = 708
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 78/203 (38%), Gaps = 31/203 (15%)
Query: 19 WVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP- 77
W +K+RP + ++ L+ + P+++ GP G+GK +AL E+ G
Sbjct: 357 WADKHRPASLNGFTLHKQEAQLLKQLVSSDICPHVLFKGPSGSGKKALTMALLREIYGDA 416
Query: 78 --NYREAVLELNASDDRGIDVV--RNKIKMFAQKKVTLPP-GRHKL-------------- 118
N + + + R + VV + V L P RH L
Sbjct: 417 SWNISHELRSFHVQEKRPMQVVVPLTSSAHHVELNVNLEPYARHALMAIVKQIRSNCEIT 476
Query: 119 -----------VILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCA 167
++L E D Q ++ M+ Y+++ + + C ++E +++RC
Sbjct: 477 PEHGSILLISVLVLYEVDKAAENIQYLIKWIMDCYTDACQLIMCCEDDVDVLESVKNRCK 536
Query: 168 LVRFSRLSDQEILGRLMVVVEAE 190
+++ EI+ L+ + E
Sbjct: 537 VIKLEAPVTHEIMEVLIQIARKE 559
>GSVIVT01003880001 assembled CDS
Length = 221
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 53 LILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
L+L GPPG GKTT LAH + + V+E+NASDDR ++ KI Q +
Sbjct: 40 LLLCGPPGLGKTT----LAH-VAAKHCGYRVVEINASDDRSSSIIEAKILDVVQMNSVMA 94
Query: 113 PGRHKLVILDEADSMTSGAQQALRRTMEIYS 143
+ +++DE D + A+ +++ S
Sbjct: 95 DSKPNCLVIDEIDGALGDGKGAVEVILKMVS 125
>GSVIVT01003592001 assembled CDS
Length = 880
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 53 LILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
L+L GPPG GKTT LAH + + V+E+NASDDR + KI Q +
Sbjct: 421 LLLCGPPGLGKTT----LAH-VAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMA 475
Query: 113 PGRHKLVILDEADSMTSGAQQALRRTMEIYSNSTR 147
+ +++DE D S + A+ +++ S +
Sbjct: 476 DSKPNCLVIDEIDGALSDGKGAVEVILKMVSTERK 510
>GSVIVT01012956001 assembled CDS
Length = 235
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 53 LILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
L+L GPPG GKTT LAH + + V+E+NASDDR + KI Q +
Sbjct: 31 LLLCGPPGLGKTT----LAH-VAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMA 85
Query: 113 PGRHKLVILDEADSMTSGAQQALRRTMEIYS 143
+ +++DE D + A+ +++ S
Sbjct: 86 DSKPNCLVIDEIDGALGDGKGAVEVILKMVS 116
>GSVIVT01034308001 assembled CDS
Length = 236
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 53 LILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
L+L GPPG GKTT LAH + + V+E+NASDDR + KI Q +
Sbjct: 28 LLLCGPPGLGKTT----LAH-VAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMA 82
Query: 113 PGRHKLVILDEADSMTSGAQQALRRTMEIYS 143
+ +++DE D + A+ +++ S
Sbjct: 83 DSKPNCLVIDEIDGALGDGKGAVEVILKMVS 113
>GSVIVT01013291001 assembled CDS
Length = 201
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 53 LILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLP 112
L+L GPPG GKTT LAH + + V+E+N SDDR + KI Q +
Sbjct: 31 LLLCGPPGLGKTT----LAH-VAAKHCGYHVVEINVSDDRSSSTIEAKILDVVQMNSVME 85
Query: 113 PGRHKLVILDEADSMTSGAQQALRRTMEIYS 143
+ +++DE D + A+ ++I S
Sbjct: 86 DSKPNCLVIDEIDGALGDGKGAVEVILKIVS 116