Jatropha Genome Database

JcCA0274731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274731.10 - phase: 1 /partial
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027920001 assembled CDS                                       100   2e-22

>GSVIVT01027920001 assembled CDS
          Length = 447

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 14/117 (11%)

Query: 8   SILTESELGPSPSEVVAAMIKNKLR-IEEMESEIIGSWSLESSMEGLHSKLERWQIEASS 66
           S+L+ESE+GPSPSEV AA+  ++ R  E+  +  +  WSL SS EGL SKL+RW+ E   
Sbjct: 269 SMLSESEVGPSPSEVAAAIAHDRCRQAEDGNNSALDGWSLNSSEEGLRSKLQRWRTELPP 328

Query: 67  VYDHSDISSLIRSSVVSGGSGPYMHHRRHSEGD----GGVFSCFGSVCGVQCSIVCG 119
           +YD      + R+        P  H RRH+EGD     G+FSCFG++CG +CSIVCG
Sbjct: 329 LYDRGAYG-IYRT--------PGGHVRRHTEGDEPDGSGLFSCFGNICGYECSIVCG 376