Jatropha Genome Database

JcCA0274511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274511.20 - phase: 0 
         (170 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003726001 assembled CDS                                        89   8e-19
GSVIVT01012670001 assembled CDS                                        84   2e-17
GSVIVT01022039001 assembled CDS                                        82   1e-16
GSVIVT01030473001 assembled CDS                                        72   9e-14
GSVIVT01002816001 assembled CDS                                        64   3e-11

>GSVIVT01003726001 assembled CDS
          Length = 173

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 76/169 (44%), Gaps = 16/169 (9%)

Query: 12  SNGALKIVLALVATFLIGYVVRPQLHSR------ESSSAQASC-PCDCDCSEEFALFL-- 62
           S G ++  L + A      V  P  + R         +A +SC PC CDC    +L    
Sbjct: 5   SGGCVRCCLVVFAVLSALCVSGPAWYWRLKKAMGSGENASSSCAPCICDCPPPLSLLKIA 64

Query: 63  -------PLDCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLEHTRALVMDARKASL 115
                     C  DDPD+  EMEK  V LL+EE+ LQ  VA +   H     ++A++ + 
Sbjct: 65  PGLVNLSVTGCGGDDPDLRREMEKQFVDLLTEELKLQEAVAAEHARHMNITFLEAKRVAS 124

Query: 116 HYQKEAEKCNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWEED 164
            YQ+EAEKCN                     K+T+ WE+RAR LGWE +
Sbjct: 125 QYQREAEKCNSATETCEGARERAEALLIKERKVTSLWERRARRLGWEGE 173


>GSVIVT01012670001 assembled CDS
          Length = 907

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 15/162 (9%)

Query: 16  LKIVLALVATFLIGYVVRPQL--HSRESSSAQA----SCP-CDCDCSEEFALFLP----- 63
           LK+ + ++   L  Y+V P L  H  E  +A +    SCP C CDCS    L +P     
Sbjct: 738 LKVAMTVLGLCLAAYIVAPPLYWHITEGVAAVSRDSFSCPPCLCDCSSHPLLSIPEGLSN 797

Query: 64  ---LDCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLEHTRALVMDARKASLHYQKE 120
               DC   DP++ E++E+    LLSEE+ L+   A ++ +     +++A+K +  YQKE
Sbjct: 798 NSFTDCMKHDPEVSEDLERSFTDLLSEELKLREAEAQENQQRADMALLEAKKMASQYQKE 857

Query: 121 AEKCNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWE 162
           A+KCN                     KLTA WE RAR+ GW+
Sbjct: 858 ADKCNMGMETCEEAREKAEATLDIQRKLTAMWEFRARQRGWK 899


>GSVIVT01022039001 assembled CDS
          Length = 309

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 37  HSRESSSAQASC-PCDCDCSEEFALFLPLDCSNDDPDIHEEMEKDIVALLSEEIALQRRV 95
           H + SS AQ SC  CDC C  +    + LDC + DPD+ EEM+K  +ALL+EE+ LQ+ V
Sbjct: 175 HFKGSSRAQTSCGSCDCGCDLDTTFSITLDCGDHDPDMKEEMKKGRLALLAEELRLQKNV 234

Query: 96  ANDSLEHTRALVMDARKASLHYQKEAEKCNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKR 155
            +D LE T+ L  + RKAS  Y+KE EKC+                     KL+A WE+R
Sbjct: 235 TDDRLERTKELTTEVRKASSQYRKEVEKCSVGIETCEEAREKAEAALVDELKLSALWEER 294

Query: 156 ARELGW 161
           A  + W
Sbjct: 295 ALSIKW 300


>GSVIVT01030473001 assembled CDS
          Length = 199

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 50  CDCDCSEEFALFLP--------LDCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLE 101
           C CDCS +  L +P         DCS  DPD+ E+ EK+   LL+EE+ L+   A ++ +
Sbjct: 62  CVCDCSSQPLLSIPHGLNNISFSDCSKHDPDMSEDTEKNFAELLTEELKLREAEALENQQ 121

Query: 102 HTRALVMDARKASLHYQKEAEKCNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGW 161
                +++A+K +  Y KEA+KCN                     KLTA W +RAR+ GW
Sbjct: 122 RADMALLEAKKITSQYLKEADKCNSGMETCEEAREKAEAALAAQKKLTAMWLQRARQKGW 181

Query: 162 EEDSTR 167
           +E   +
Sbjct: 182 KEGVAK 187


>GSVIVT01002816001 assembled CDS
          Length = 115

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 47/90 (52%)

Query: 73  IHEEMEKDIVALLSEEIALQRRVANDSLEHTRALVMDARKASLHYQKEAEKCNXXXXXXX 132
           +  EMEK  V LL+EE+ LQ  VA +   H     ++A++ +  YQ+EAEKCN       
Sbjct: 24  LRREMEKQFVDLLTEELKLQEAVAAEHARHMNITFLEAKRVASQYQREAEKCNSATETCE 83

Query: 133 XXXXXXXXXXXXXYKLTAEWEKRARELGWE 162
                         K+T+ WE+RAR LGWE
Sbjct: 84  GARERAEALLIKERKVTSLWERRARRLGWE 113