Jatropha Genome Database

JcCA0274511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274511.10 + phase: 0 /partial
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022056001 assembled CDS                                       188   6e-49

>GSVIVT01022056001 assembled CDS
          Length = 477

 Score =  188 bits (477), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 86/104 (82%), Positives = 97/104 (93%)

Query: 17  GNNIYGDDVKENLLRLQREGSEEDAAYILMQRIFPAVSPALLVRNGICHKDHAISELGIY 76
           GNNIYGDDV+E LLRLQ+EG+EEDAAYILMQRIFP VSP  L+R GIC+KDHAISELGIY
Sbjct: 373 GNNIYGDDVRETLLRLQKEGTEEDAAYILMQRIFPNVSPTFLMREGICYKDHAISELGIY 432

Query: 77  SAYLRNKDKVIINDKSGYLVRTKVASSNEGGVAAGFAVLDSVYL 120
            AYLRNK+KVIIND+ G+L+RTKV+SSNEGGVAAGFAVLDS+YL
Sbjct: 433 GAYLRNKEKVIINDQCGHLMRTKVSSSNEGGVAAGFAVLDSIYL 476