Jatropha Genome Database

JcCA0274451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274451.10 - phase: 0 /pseudo/partial
         (87 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002251001 assembled CDS                                        58   1e-09

>GSVIVT01002251001 assembled CDS
          Length = 108

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 13/66 (19%)

Query: 35  LIDTSFFFCLG-------------IGCRLSYKNGGLGTVSQKLSSELTNMQMGLTDDKMG 81
           L+D    FC G             +G R+SY+N G+G VSQ+L S LT +QMGLT+D M 
Sbjct: 43  LLDADEVFCTGTAVVVSPVGSITYLGKRVSYQNNGIGVVSQQLYSALTRLQMGLTEDVMN 102

Query: 82  WNMVLK 87
           W M LK
Sbjct: 103 WTMELK 108