Jatropha Genome Database

JcCA0273951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273951.10 - phase: 1 /partial
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032805001 assembled CDS                                       340   4e-94

>GSVIVT01032805001 assembled CDS
          Length = 277

 Score =  340 bits (872), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 169/272 (62%), Positives = 204/272 (75%), Gaps = 2/272 (0%)

Query: 1   LATGNHLQ--PKFVNLQTGHVSGRKMGKIYLARLGHSKKRTACKFSPSEKVTFAHEEHEK 58
           LA G+HLQ  P+ +N++   +   +  K + +R+ +S+       S S +   +HEE+ K
Sbjct: 6   LALGSHLQLQPRVLNMKKMPIPELQGRKEHFSRITYSETIRTSVISQSAEGPPSHEEYVK 65

Query: 59  NWPLVKMCXXXXXXXXXXXXXXXXXXXXMIIWPNSKRSISLSVAKEISKVARSYGAKPVG 118
           N PLVKMC                    MI+WPNSKRSISLSVAKEISKVAR YGA+PVG
Sbjct: 66  NRPLVKMCGITSARDAAAAAEAGANFIGMILWPNSKRSISLSVAKEISKVAREYGAEPVG 125

Query: 119 VFVDDDTDTILRAADACDLEFVQLHGTGSRAAFPDLVKEKQVIYVLHANADGNLINQISD 178
           VFVDDD DTIL+A+DA ++EFVQLHG GSRAAFP LV+E QVIYVLHAN DG L+NQIS+
Sbjct: 126 VFVDDDADTILKASDATNIEFVQLHGNGSRAAFPVLVQENQVIYVLHANKDGELLNQISN 185

Query: 179 EDCSMVDWVLVDSATGGSGKGFNWAQFKLPPIRSKHGWLLAGGIHSENVCEALSILKPHG 238
           E+ S+VDW+LVDSA GGSG+GFNWAQFKLPP+RSK GWLLAGGI+ ENV EALS L+PHG
Sbjct: 186 EESSLVDWILVDSAIGGSGQGFNWAQFKLPPVRSKQGWLLAGGINPENVYEALSTLRPHG 245

Query: 239 VDVSSGICDSDGIKKDQSQISSLMYAVRSVRY 270
           +DVSSGIC SDGI+KD+S+ISS M AV SV Y
Sbjct: 246 IDVSSGICASDGIQKDRSRISSFMTAVNSVHY 277