Jatropha Genome Database

JcCA0273941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273941.10 - phase: 0 /partial
         (191 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033412001 assembled CDS                                       316   5e-87
GSVIVT01027903001 assembled CDS                                       110   4e-25
GSVIVT01021323001 assembled CDS                                       105   1e-23

>GSVIVT01033412001 assembled CDS
          Length = 225

 Score =  316 bits (809), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 149/156 (95%), Positives = 153/156 (98%), Gaps = 2/156 (1%)

Query: 29  DKEAE--ERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWV 86
           DKEAE  ERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIV+FSTVEGFW+
Sbjct: 28  DKEAEDRERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWI 87

Query: 87  CYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALV 146
           CYCHLARPS+LPSPTDLHLFKEGIRPLWEDSAN NGGKWIIRFKKVVSGR+WEDLVLALV
Sbjct: 88  CYCHLARPSALPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALV 147

Query: 147 GDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 182
           GDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA
Sbjct: 148 GDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 183


>GSVIVT01027903001 assembled CDS
          Length = 190

 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 81/139 (58%), Gaps = 2/139 (1%)

Query: 45  HPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPTDLH 104
           H L+ K+ FW+  ++   +   ++  +++K   F TVE FW  Y  + +PS LP+  D H
Sbjct: 15  HRLERKWTFWFDNQSKP-KQGAAWGTSLRKAYTFETVEEFWCLYDQIFKPSKLPANADFH 73

Query: 105 LFKEGIRPLWEDSANSNGGKWII-RFKKVVSGRYWEDLVLALVGDQLDYGDNICGAVLSI 163
           LFK G+ P WED   +NGGKW +   +K      W + ++AL+G+Q D  D ICG V S+
Sbjct: 74  LFKAGVEPKWEDPECANGGKWTVASSRKGNLDTMWLETLMALIGEQFDEADEICGVVASV 133

Query: 164 RFNEDILSVWNRNASDHQA 182
           R  +D L++W + A++  A
Sbjct: 134 RQRQDKLALWTKTATNEAA 152


>GSVIVT01021323001 assembled CDS
          Length = 150

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 68/111 (61%)

Query: 72  IKKIVEFSTVEGFWVCYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKK 131
           ++ I  FS VE FW  Y ++  PS L    D H FK  I P WED   +NGGKW + F K
Sbjct: 1   MRPIYTFSNVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPVCANGGKWTVTFAK 60

Query: 132 VVSGRYWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 182
             S   W   +LA++G+Q D+GD ICGAV+++R  ++ +++W +NAS+  A
Sbjct: 61  GKSDTCWLYTLLAMIGEQFDHGDEICGAVINVRARQEKIALWTKNASNEAA 111