Jatropha Genome Database
- JcCA0273631.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0273631.30 - phase: 1 /partial
(66 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01019000001 assembled CDS 109 3e-25
GSVIVT01009680001 assembled CDS 109 3e-25
GSVIVT01025658001 assembled CDS 105 4e-24
GSVIVT01016867001 assembled CDS 104 9e-24
GSVIVT01003119001 assembled CDS 103 1e-23
GSVIVT01025166001 assembled CDS 103 2e-23
GSVIVT01031112001 assembled CDS 101 8e-23
GSVIVT01010283001 assembled CDS 100 1e-22
GSVIVT01035391001 assembled CDS 100 1e-22
GSVIVT01020612001 assembled CDS 100 2e-22
GSVIVT01010284001 assembled CDS 99 5e-22
GSVIVT01011587001 assembled CDS 91 1e-19
GSVIVT01008486001 assembled CDS 88 8e-19
GSVIVT01010961001 assembled CDS 80 2e-16
GSVIVT01029437001 assembled CDS 75 5e-15
GSVIVT01004847001 assembled CDS 48 8e-07
GSVIVT01034505001 assembled CDS 45 7e-06
>GSVIVT01019000001 assembled CDS
Length = 492
Score = 109 bits (272), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DPDAEV+ALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 47 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 94
>GSVIVT01009680001 assembled CDS
Length = 496
Score = 109 bits (272), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DPDAEV+ALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 38 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 85
>GSVIVT01025658001 assembled CDS
Length = 469
Score = 105 bits (262), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 48/48 (100%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DPDAEV+ALSPKTLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 44 DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL 91
>GSVIVT01016867001 assembled CDS
Length = 249
Score = 104 bits (259), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DPDAEV+ALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 58 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 105
>GSVIVT01003119001 assembled CDS
Length = 399
Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 48/48 (100%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DPDAEV+ALSPKTL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 53 DPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 100
>GSVIVT01025166001 assembled CDS
Length = 477
Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 48/48 (100%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DP+AEV+ALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 43 DPEAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL 90
>GSVIVT01031112001 assembled CDS
Length = 513
Score = 101 bits (251), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DP AEV+ALSP TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 68 DPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 115
>GSVIVT01010283001 assembled CDS
Length = 348
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 49/55 (89%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYE 55
+PDAEV+ALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL E
Sbjct: 126 NPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLRQKTTKE 180
>GSVIVT01035391001 assembled CDS
Length = 377
Score = 100 bits (250), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 47/48 (97%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DP+AEV+ALSPKTL ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 34 DPNAEVVALSPKTLQATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL 81
>GSVIVT01020612001 assembled CDS
Length = 427
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/48 (91%), Positives = 47/48 (97%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
DP+AEV+ALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL
Sbjct: 38 DPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKL 85
>GSVIVT01010284001 assembled CDS
Length = 490
Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 2 PDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYE 55
P+AEV+ALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL E
Sbjct: 50 PNAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKE 103
>GSVIVT01011587001 assembled CDS
Length = 387
Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 47/55 (85%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYE 55
DPDAEV++LSPKTL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKLL E
Sbjct: 39 DPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQE 93
>GSVIVT01008486001 assembled CDS
Length = 233
Score = 88.2 bits (217), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 46/49 (93%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLL 49
DPDAEV++LSPKTL+ ++R++CEICN+GFQRDQNLQ+HRR H +PWKLL
Sbjct: 38 DPDAEVVSLSPKTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLL 86
>GSVIVT01010961001 assembled CDS
Length = 423
Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/34 (100%), Positives = 34/34 (100%)
Query: 15 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 1 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 34
>GSVIVT01029437001 assembled CDS
Length = 394
Score = 75.1 bits (183), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 30/34 (88%), Positives = 34/34 (100%)
Query: 15 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
MATNR++CE+C+KGFQRDQNLQLHRRGHNLPWKL
Sbjct: 1 MATNRYICEVCHKGFQRDQNLQLHRRGHNLPWKL 34
>GSVIVT01004847001 assembled CDS
Length = 383
Score = 48.1 bits (113), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1 DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSL 52
D D EV+ L L+A + C+IC KGF+RD NL++H R H +K ++L
Sbjct: 149 DGDCEVIELDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGNQFKTPEAL 200
>GSVIVT01034505001 assembled CDS
Length = 262
Score = 45.1 bits (105), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 5 EVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK 47
E++ L + ++A + C IC KGF+RD NL++H RGH +K
Sbjct: 25 EILQLEKEEILAPHTHFCMICGKGFKRDANLRMHMRGHGDEYK 67