Jatropha Genome Database

JcCA0273631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273631.10 - phase: 0 
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020655001 assembled CDS                                       190   5e-49
GSVIVT01025503001 assembled CDS                                       146   1e-35

>GSVIVT01020655001 assembled CDS
          Length = 205

 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 10/162 (6%)

Query: 8   LCSFNNLFTFFIAFYFLVPSAHSKAPLIGVHPLDEKYFSSRLIKCKDGSKSFPRDSLNDN 67
           LC F  L     AF+ +  S  S  P++G+HPLDEKY++S+ IKCKDGSK F +  +NDN
Sbjct: 5   LCFF--LIALISAFFLITYS--SALPILGIHPLDEKYYASQAIKCKDGSKFFNKARINDN 60

Query: 68  FCDCVDGTDEPGTSACPRGKFYCQNLGSKPQFIFSSHVNDRICDCCDGSDEYDSGINCPN 127
           FCDC+DGTDEPGTSACP GKFYC+N+GS P+F+FSS VND  CDCCDGSDEY   INCPN
Sbjct: 61  FCDCIDGTDEPGTSACPAGKFYCKNVGSTPKFLFSSQVNDHFCDCCDGSDEYSGSINCPN 120

Query: 128 TCIMGGNLEYKARRFISA------TDAKESXXXXXXXXXXHK 163
           TC+MGG++EY+ +  +SA       D KE+          HK
Sbjct: 121 TCVMGGDVEYQTKSHVSAIGEVDPIDVKEAKTKLNLEDQIHK 162


>GSVIVT01025503001 assembled CDS
          Length = 638

 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 86/133 (64%), Gaps = 8/133 (6%)

Query: 11  FNNLFTFF-IAFYFLVPSAHSKA-----PLIGVHPLDEKYF--SSRLIKCKDGSKSFPRD 62
            +NLF    + F   +  + SK+     P +G+ P DE Y+  SS + KCKDGSK   R 
Sbjct: 7   IHNLFLILGVLFISQIGRSASKSLLSTNPFLGIAPQDENYYKTSSEIFKCKDGSKKLNRA 66

Query: 63  SLNDNFCDCVDGTDEPGTSACPRGKFYCQNLGSKPQFIFSSHVNDRICDCCDGSDEYDSG 122
            +ND+FCDC D +DEPGTSACP GKFYC+N G  P  +FSS VND ICDCCDGSDEYD  
Sbjct: 67  QVNDDFCDCPDASDEPGTSACPGGKFYCRNAGHVPLLLFSSRVNDGICDCCDGSDEYDGK 126

Query: 123 INCPNTCIMGGNL 135
           + CPNTC   G +
Sbjct: 127 VKCPNTCWEAGKV 139