Jatropha Genome Database

JcCA0273051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273051.10 - phase: 1 /partial
         (55 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033852001 assembled CDS                                        65   6e-12

>GSVIVT01033852001 assembled CDS
          Length = 279

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 35/52 (67%)

Query: 4  VKFGYYGAVGPEKWGSLSPTYSECSKGKSQSPINIIKNDTVLDSNLKPLIRD 55
          V F Y G +GP  WG L P + EC  GKSQSP++II N T L+ NLKPL R+
Sbjct: 34 VPFSYAGQMGPANWGKLHPQFQECVVGKSQSPVDIITNKTELNPNLKPLSRN 85