Jatropha Genome Database

JcCA0272091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0272091.10 + phase: 0 /partial
         (423 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037380001 assembled CDS                                       364   e-101
GSVIVT01037383001 assembled CDS                                       344   5e-95

>GSVIVT01037380001 assembled CDS
          Length = 948

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/415 (52%), Positives = 259/415 (62%), Gaps = 67/415 (16%)

Query: 24  KASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHSSS 83
           KAS KSSG  N  S  PASAY+P+ GTFH LE    TS+P                    
Sbjct: 20  KASSKSSGPANAGSSIPASAYDPVLGTFHGLEPTPVTSAPPLQ----------------- 62

Query: 84  PHGTVSEYDSVSNNGSCSGESEDPKDKTTSS-TRQETVPGLENDRREKIRLKNEKKHQRQ 142
                SEYD+ SNNGS SGESED K+K ++   RQE +PG +ND+REKIR KNE+KHQRQ
Sbjct: 63  -----SEYDAASNNGSWSGESEDHKEKASNPPVRQEAIPGADNDKREKIRQKNERKHQRQ 117

Query: 143 KERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFEGN 202
           KERRAQELHERCSGYLMSRKLEAL++QLVAMGF+ ERAT+AL+LNEGRVEESV+WLFEG 
Sbjct: 118 KERRAQELHERCSGYLMSRKLEALAQQLVAMGFTSERATMALILNEGRVEESVSWLFEGG 177

Query: 203 EEEARNKDSKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAEEIL 262
           EE  ++K   L   +NLKIDI+EELAQI+ LE+RYKCSKQEVERAIVA EGDL KAEE L
Sbjct: 178 EEADKHKSENLDGGNNLKIDIAEELAQITGLEMRYKCSKQEVERAIVASEGDLAKAEETL 237

Query: 263 QAQKLEQPATPLTSEEVTDANDLKRTHEKPLSSSITIQQRRNEQDFNYAKTSIALPMYSE 322
           +AQ+ + P+TP  SEE  D   +                           TS      SE
Sbjct: 238 RAQRQDPPSTPPNSEETDDPPTITN------------------------GTS------SE 267

Query: 323 PGNRSLQPLN------------QSRSLADKRWTATGTSPSFSLGMASPGQVTPQSAKLEV 370
           PG++++QPL             Q     DKR    G++ S S  MASP QV+   AK E 
Sbjct: 268 PGSKNVQPLKGTQPKLEWARQQQIVMQEDKRLLTAGSNSSHSYTMASPLQVSQPPAKTET 327

Query: 371 RLGVSGNEGKNHQ-HILREPIVMMQRRQSINAKQNQVPSISASPSVT-AGWYSNN 423
           R    GNE KN Q   +REP+++MQR QSIN K     S+++SP  T AGWY +N
Sbjct: 328 RFAAVGNEFKNLQPGPVREPVIVMQRPQSINLKHVSSTSMNSSPPGTAAGWYHSN 382


>GSVIVT01037383001 assembled CDS
          Length = 517

 Score =  344 bits (882), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 202/404 (50%), Positives = 254/404 (62%), Gaps = 48/404 (11%)

Query: 23  QKASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHSS 82
           QKAS K S   +T SGTP S YNP+ GTFHTLE  S  SSP                   
Sbjct: 19  QKASSKPSAPPSTGSGTPTSGYNPLLGTFHTLETASFGSSP------------------- 59

Query: 83  SPHGTVSEYDSVSNNGSCSGESEDPKDKTTSST-RQETVPGLENDRREKIRLKNEKKHQR 141
              GT  EYD++SNN S SGESED K+KT++ T +Q T+PG +ND+REKIR KNE+KH R
Sbjct: 60  ---GTGFEYDAISNNDSWSGESEDHKEKTSNPTGKQGTIPGADNDKREKIRQKNERKHLR 116

Query: 142 QKERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFEG 201
           QKERRAQ+LHERCSGYLMSRKLE L++QL+ MGFS ERAT+AL+LNEG+VEESV WLFEG
Sbjct: 117 QKERRAQDLHERCSGYLMSRKLEVLAQQLMTMGFSSERATMALILNEGKVEESVAWLFEG 176

Query: 202 NEEEARNKDSKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAEEI 261
            EE   +K   L   SNLKIDI+EELA+I+ +E++Y C +Q+VERAIVA EGDL KA E 
Sbjct: 177 GEEADNHKGQNLDGGSNLKIDIAEELAKIADMEIKYNCLRQDVERAIVAGEGDLEKAAET 236

Query: 262 LQAQKLEQPATPLTSEEVTDANDLKRTHEKPLSSSITIQQRRNEQDFNYAKT-SIALPMY 320
           L+AQ+ + PATP   E   D  ++     +  + ++    +R      +AK   IA P  
Sbjct: 237 LRAQRHDPPATP-KPEATGDPPNINNACLEAGNKNVP-PAKRIPPKLEWAKPQQIATP-- 292

Query: 321 SEPGNRSLQPLNQSRSLADKRWTATGTSPSFSLGMASPGQVTPQSAKLEVRLGVSGNEGK 380
                            A+KRW + G++PS S  +AS   V P   K E R    G+E K
Sbjct: 293 -----------------AEKRWPSAGSNPSVSYSVAS-SLVPPPPPKAETRYVAVGSEPK 334

Query: 381 NHQ-HILREPIVMMQRRQSINAKQNQVPSISASPSVTAGWYSNN 423
             Q   LREP+++MQR QSIN++Q  + SIS+SP   AGWY NN
Sbjct: 335 TLQPGSLREPVIVMQRPQSINSEQ-VLASISSSPGAAAGWYPNN 377