Jatropha Genome Database

JcCA0271581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271581.10 + phase: 0 /partial
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003183001 assembled CDS                                       352   9e-98
GSVIVT01010995001 assembled CDS                                       276   5e-75
GSVIVT01033011001 assembled CDS                                       271   2e-73
GSVIVT01021910001 assembled CDS                                       261   3e-70
GSVIVT01009126001 assembled CDS                                       227   4e-60
GSVIVT01000962001 assembled CDS                                       159   1e-39
GSVIVT01024477001 assembled CDS                                       103   6e-23
GSVIVT01016368001 assembled CDS                                        95   3e-20
GSVIVT01023363001 assembled CDS                                        71   5e-13
GSVIVT01003791001 assembled CDS                                        52   3e-07

>GSVIVT01003183001 assembled CDS
          Length = 553

 Score =  352 bits (903), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/248 (69%), Positives = 196/248 (79%), Gaps = 33/248 (13%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
           N+TELDIQENGIDD  G WLSCFPENF+SLE+LNFANL+S+V+FDALE+L          
Sbjct: 172 NMTELDIQENGIDDLGGGWLSCFPENFTSLEVLNFANLSSDVSFDALEKL---------- 221

Query: 63  KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
                                  LGTGSF QEL+T+QY +LE+AF++CKNL+TLSGLWEA
Sbjct: 222 -----------------------LGTGSFHQELTTRQYAELESAFNNCKNLNTLSGLWEA 258

Query: 123 MALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
             LYLPVLYPAC NLTFLNLS AALQS EL  LL  CP L+RLWVLDTVEDKGLEAVG  
Sbjct: 259 TPLYLPVLYPACMNLTFLNLSDAALQSGELAKLLARCPNLQRLWVLDTVEDKGLEAVGLS 318

Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
           CPLLEELRVFPADP++++++HGVTE GFVAVSYGC RLHYVLYFCRQMTNAAVATIV+NC
Sbjct: 319 CPLLEELRVFPADPYEQDVVHGVTEMGFVAVSYGCPRLHYVLYFCRQMTNAAVATIVKNC 378

Query: 243 PNFTHFRL 250
           P+FTHFRL
Sbjct: 379 PDFTHFRL 386


>GSVIVT01010995001 assembled CDS
          Length = 466

 Score =  276 bits (707), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 134/248 (54%), Positives = 180/248 (72%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
           NL ELD++E+ +DD SG WL+ FP++ +SL  LN + L SEV+F ALERLV RC SL+ L
Sbjct: 43  NLRELDLRESEVDDFSGHWLTHFPDSCTSLVSLNISCLASEVSFSALERLVGRCPSLRTL 102

Query: 63  KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
           ++N+ + LD+L  LL  APQL ELGTG++S E   + ++ L  AFS+CK L +LSG W+ 
Sbjct: 103 RLNRAVPLDRLPNLLRRAPQLVELGTGAYSAEHRPEVFSSLAGAFSNCKELKSLSGFWDV 162

Query: 123 MALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
           +  YLP +YPAC+ +T LNLSYA +QS +L  L+  C  L+RLWVLD +ED GL+A+ + 
Sbjct: 163 VPDYLPAVYPACSGITSLNLSYATIQSPDLIKLVTQCQNLQRLWVLDYIEDSGLDALAAS 222

Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
           C  L+ELRVFP++P+D E    +TE G V+VS GC +LH VLYFCRQMTNAA+ +I +N 
Sbjct: 223 CKDLQELRVFPSEPYDMEGNVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALVSIAKNR 282

Query: 243 PNFTHFRL 250
           PN T FRL
Sbjct: 283 PNMTRFRL 290


>GSVIVT01033011001 assembled CDS
          Length = 534

 Score =  271 bits (694), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 174/248 (70%), Gaps = 2/248 (0%)

Query: 4   LTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVLK 63
           L ELD+QEN ++D+ G WLSCFP++ +SL  LNFA L  EVN  ALERLV RC +LK L+
Sbjct: 44  LRELDLQENEVEDRKGQWLSCFPDSCTSLVSLNFACLKGEVNLTALERLVARCPNLKSLR 103

Query: 64  VNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEAM 123
           +N+ + LD LQR+L+ APQL +LGTGS+  +   +    L + F  CK++ ++SG  E  
Sbjct: 104 LNRAVPLDALQRILMHAPQLVDLGTGSYVHDPDAETVNKLISTFQKCKSIRSMSGFLEVA 163

Query: 124 ALYLPVLYPACTNLTFLNLSYA-ALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
            L LP +YP C+NLT LNLSYA  +   EL  L+R+C +L+RLW+LD + DKGL  V   
Sbjct: 164 PLCLPAIYPICSNLTSLNLSYAPGIHGDELIKLIRYCRKLQRLWILDCIGDKGLGVVACT 223

Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
           C  L+ELRVFP+DPF       VTE G VA+S+GC +LH +LYFC+QMTNAA+ TI +NC
Sbjct: 224 CKELQELRVFPSDPFGVG-NAAVTEEGLVAISFGCPKLHSLLYFCQQMTNAALITIAKNC 282

Query: 243 PNFTHFRL 250
           PNFT FRL
Sbjct: 283 PNFTRFRL 290


>GSVIVT01021910001 assembled CDS
          Length = 471

 Score =  261 bits (666), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/248 (53%), Positives = 170/248 (68%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
           NL ELD+ E+ +DD SG+WLS FP++++SLE LN  +L+SE+ F ALERLV RC +LK L
Sbjct: 43  NLKELDLSESEVDDVSGNWLSQFPDSYTSLESLNITSLSSEIRFTALERLVGRCPNLKTL 102

Query: 63  KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
           K++ ++ LD L  LL  APQL ELG+G  ++E+    Y+ L  AFS CK L  L GL + 
Sbjct: 103 KLSHSVPLDLLPNLLQKAPQLVELGSGLHTKEVHPDLYSKLAGAFSGCKGLKRLCGLRDV 162

Query: 123 MALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
           +  YLP LYP C  LT LNLS A +Q  EL  L+  C  L+RLWVLD +ED GL A+   
Sbjct: 163 VPSYLPTLYPICFGLTSLNLSDAPIQCPELIKLVSQCQNLQRLWVLDYIEDTGLIALAES 222

Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
           C  L ELRVFP+DPF +E    +TE G V+VS GC +LH VLYFCR+M+N A++TI +N 
Sbjct: 223 CKDLRELRVFPSDPFGQEPNVSLTEQGLVSVSAGCPKLHSVLYFCRRMSNVALSTIARNR 282

Query: 243 PNFTHFRL 250
           PN T FRL
Sbjct: 283 PNLTRFRL 290


>GSVIVT01009126001 assembled CDS
          Length = 552

 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/251 (47%), Positives = 163/251 (64%), Gaps = 4/251 (1%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
            L  LD+ E+ + D    W+SCFPE+ + LE L F  +   +NF+ALERLV R  SL+ L
Sbjct: 135 QLRVLDLIEDEVTDDEVDWISCFPESGTCLESLIFDCIECPINFEALERLVARSPSLRKL 194

Query: 63  KVNKNISLDQLQRLLVGAPQLTELGTGSFSQE---LSTQQYTDLENAFSHCKNLDTLSGL 119
           ++N+ +S+ QL RL++ APQLT LG+GSFS         Q  D  +AF+ CK+L  LSG 
Sbjct: 195 RLNRYVSIGQLYRLMIRAPQLTHLGSGSFSSSDIVAQGDQEPDYISAFAACKSLVCLSGF 254

Query: 120 WEAMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAV 179
            E +  YLP +YP C NLT LN SYA + + +L +++ HC +L+  WVLD+V D+GL+AV
Sbjct: 255 REIIPDYLPAIYPVCANLTSLNFSYANINTEQLKSVICHCHKLQIFWVLDSVCDEGLQAV 314

Query: 180 GSHCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIV 239
            + C  L ELRVFP D   E+    V+E G  A+S GCR+L  +LYFC++MTNAAV  + 
Sbjct: 315 AATCKELRELRVFPIDA-REDSEGPVSEVGLQAISEGCRKLQSILYFCQRMTNAAVIAMS 373

Query: 240 QNCPNFTHFRL 250
           +NCP+   FRL
Sbjct: 374 KNCPDLVVFRL 384


>GSVIVT01000962001 assembled CDS
          Length = 300

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 114/188 (60%), Gaps = 1/188 (0%)

Query: 13  GIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVLKVNKNISLDQ 72
           G+ D  G WLSCFPE+ SSL  LNFA     VN +ALE+LV RC +L+ L++N+ +  + 
Sbjct: 56  GVGDGIGQWLSCFPESCSSLVSLNFACTKGVVNLEALEKLVARCPNLRSLRLNRRVPPNV 115

Query: 73  LQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEAMALYLPVLYP 132
           LQRLL  APQL +LG GSFS     + Y  L+NA S C+++ +LSG      LY   +YP
Sbjct: 116 LQRLLQQAPQLEDLGIGSFSNYTDRRTYLRLQNAVSKCRSIRSLSGFSSFTPLYQAAIYP 175

Query: 133 ACTNLTFLNLSYAA-LQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSHCPLLEELRV 191
            C+NL  LNLS A  L +  L  ++  C +L+ LWVLD + DKGL  V   C  L+ LRV
Sbjct: 176 MCSNLISLNLSKAVELPAHSLMEIISRCKKLQNLWVLDNIGDKGLGLVADTCKNLQVLRV 235

Query: 192 FPADPFDE 199
           F     +E
Sbjct: 236 FRLGSHNE 243


>GSVIVT01024477001 assembled CDS
          Length = 135

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 53  VTRCKSLKVLKVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKN 112
           + RC +LK  ++N+ + LD LQR+L  APQL +L TGS+  +   +    L + F  CK+
Sbjct: 1   MARCPNLKSSRLNRAVPLDALQRILAHAPQLVDLDTGSYVHDPDAETVIKLISTFQKCKS 60

Query: 113 LDTLSGLWEAMALYLPVLYPACTNLTFLNLSYA-ALQSLELDNLLRHCPQLRRLWVLD 169
           + ++SG  E   L  P +YP C+NLT LNLSYA  +   EL  L+ H  +LRRLW+LD
Sbjct: 61  MRSMSGFLEVAPLCPPAIYPICSNLTSLNLSYAPGMHGDELIKLIHHYKKLRRLWILD 118


>GSVIVT01016368001 assembled CDS
          Length = 598

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 121/251 (48%), Gaps = 11/251 (4%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLN-SEVNFDALERLVTRCKSLKV 61
           NL  L ++E+ I DK G WL     N + LE LNF     + V F+ LE +   C+SL  
Sbjct: 170 NLRTLFLEESQIVDKDGEWLHELAMNNTVLETLNFYMTELATVQFEDLELIARNCRSLTS 229

Query: 62  LKVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWE 121
           +K++    LD L      A  L E   GSFS++      +D  +A S    L  L GL  
Sbjct: 230 MKISDFEILD-LVGFFRAATALEEFAGGSFSEQ------SDKYSAVSFPPKLCRL-GLNY 281

Query: 122 AMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
                +P+++P  + L  L+L Y  L + +   L++ CP L  L   + + D+GLE +  
Sbjct: 282 MGKNEMPIVFPFASLLKKLDLLYCLLDTEDHCLLIQKCPNLEFLEARNVIGDRGLEVLAQ 341

Query: 182 HCPLLEELRV-FPADPFDEEIIHG-VTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIV 239
            C  L  LR+   AD  + E   G V++ G +A++ GC  + YV  +   +TNAA+  I 
Sbjct: 342 SCKKLRRLRIERGADEQEMEDEEGVVSQRGLMALARGCLEIEYVAIYVSDITNAALECIG 401

Query: 240 QNCPNFTHFRL 250
            +      FRL
Sbjct: 402 AHSKKLCDFRL 412


>GSVIVT01023363001 assembled CDS
          Length = 147

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 3   NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
           NLTELD++E+ +DD SG WL+ FP++  SL  LN + L S V+F ALERLV RC SL+ L
Sbjct: 58  NLTELDLRESEVDDFSGHWLTHFPDSCISLVSLNISCLASGVSFSALERLVGRCPSLRTL 117

Query: 63  KVNKNISLDQLQRLLVGAPQLTELG 87
           +    + +D L     G P    LG
Sbjct: 118 RPKLMLRMDAL-----GLPMARTLG 137


>GSVIVT01003791001 assembled CDS
          Length = 127

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 116 LSGLWEAMALYLPVLYPACTNLTFLNLSYA-ALQSLELDNLLRHCPQLRRLWVLDTVEDK 174
           +S +   MA  +  +YP C+NLT   LSYA  +   EL  L+ H  +L+RLW+LD   +K
Sbjct: 3   MSFIIATMATTMLTIYPICSNLTSFKLSYALRIHETELIKLIHHYRKLQRLWILDCTGNK 62

Query: 175 GLEAVGS 181
           G+  V S
Sbjct: 63  GVGVVVS 69