Jatropha Genome Database

JcCA0271351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271351.10 + phase: 0 /partial
         (180 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011007001 assembled CDS                                       275   8e-75
GSVIVT01003912001 assembled CDS                                       110   5e-25
GSVIVT01032512001 assembled CDS                                        92   2e-19
GSVIVT01007803001 assembled CDS                                        91   2e-19
GSVIVT01022768001 assembled CDS                                        59   1e-09
GSVIVT01024782001 assembled CDS                                        50   7e-07

>GSVIVT01011007001 assembled CDS
          Length = 612

 Score =  275 bits (703), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 160/186 (86%), Gaps = 7/186 (3%)

Query: 1   VPYYADGGQPSYLIIAGLVFTPLSEPLIDAEGEDSMGLKLLAKARYSLSRFKGEQIVILS 60
           VPY+ +GGQPSYLII+GLVFTPLSEPLI+ E ED++GLKLL KARYSL+RFKGEQIVILS
Sbjct: 428 VPYHIEGGQPSYLIISGLVFTPLSEPLIEEECEDTIGLKLLTKARYSLARFKGEQIVILS 487

Query: 61  QVLSNEVNIGYEDMSNQQ------VLKYNGTRVKNIHHLAYLVDSCKERYLVFEFDDNYV 114
           QVL+NEVNIGYE+MSNQQ      VLK+NGT +KNIHHLA+L+DSCK++YLVFEF+DNY+
Sbjct: 488 QVLANEVNIGYENMSNQQASNNLNVLKFNGTWIKNIHHLAHLIDSCKDKYLVFEFEDNYL 547

Query: 115 AVLERQAANAALSSILRDYGIRCERSPDLLEPYVDSPGDNQVKERDPLGDGPVSNLEIGF 174
           AVLER+AA AA   IL+DYGI  ERS DLL+PY+DS GDN+   +D  GD PVSNLEIG 
Sbjct: 548 AVLEREAAAAASPCILKDYGIPSERSSDLLKPYMDSLGDNRSINQD-FGDIPVSNLEIGS 606

Query: 175 DGLLWA 180
           DGLLWA
Sbjct: 607 DGLLWA 612


>GSVIVT01003912001 assembled CDS
          Length = 564

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 83/139 (59%), Gaps = 3/139 (2%)

Query: 10  PSYLIIAGLVFTPLSEPLIDAEGED---SMGLKLLAKARYSLSRFKGEQIVILSQVLSNE 66
           PSY I AGLVF PL++P +   GED   +   +L  +A   L    GEQIVILSQVL ++
Sbjct: 413 PSYFIFAGLVFVPLTQPYLHEYGEDWYNTCPRRLCERALRELPTRPGEQIVILSQVLMDD 472

Query: 67  VNIGYEDMSNQQVLKYNGTRVKNIHHLAYLVDSCKERYLVFEFDDNYVAVLERQAANAAL 126
           +N GYE +++ QV K NG  +KN+ H + LV++C    L F+ DD  V VL  Q A  A 
Sbjct: 473 INAGYERLADLQVKKVNGVEIKNLKHFSQLVENCSMESLRFDLDDERVIVLNYQLAKIAT 532

Query: 127 SSILRDYGIRCERSPDLLE 145
           S IL+ + I    S DL++
Sbjct: 533 SRILKRHRIPSAMSRDLIQ 551


>GSVIVT01032512001 assembled CDS
          Length = 464

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 4/144 (2%)

Query: 4   YADGGQPSYLIIAGLVFTPLSEPLIDAE-GED---SMGLKLLAKARYSLSRFKGEQIVIL 59
           +  G  PSY II G VFT +S P + +E G+D      +KLL K  YS+++   EQ+V++
Sbjct: 319 HIKGRPPSYYIIGGFVFTAVSVPYLRSEYGKDYEFDAPVKLLDKHLYSMAQSVDEQLVVV 378

Query: 60  SQVLSNEVNIGYEDMSNQQVLKYNGTRVKNIHHLAYLVDSCKERYLVFEFDDNYVAVLER 119
           +QVL  ++NIGYE++ N QVL +NG  VKN+  LA +V+SC + +L FE +   + VL+ 
Sbjct: 379 AQVLVADINIGYEEIVNTQVLSFNGKPVKNLKSLATMVESCDDEFLKFELEYQQIVVLQT 438

Query: 120 QAANAALSSILRDYGIRCERSPDL 143
           + A AA   IL  + I    S DL
Sbjct: 439 KTAKAATLDILTTHCIPSAMSDDL 462


>GSVIVT01007803001 assembled CDS
          Length = 464

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 4/147 (2%)

Query: 1   VPYYADGGQPSYLIIAGLVFTPLSEPLIDAE-GED---SMGLKLLAKARYSLSRFKGEQI 56
           +P +  G  PSY IIAG VF+ +S P + +E G+D      +KLL K  +S+ + + EQ+
Sbjct: 316 IPAHNKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMPQSEDEQL 375

Query: 57  VILSQVLSNEVNIGYEDMSNQQVLKYNGTRVKNIHHLAYLVDSCKERYLVFEFDDNYVAV 116
           V++SQVL  ++NIGYED+ N QVL  NG  VKN+  LA +V+SC + +L F+ +   + V
Sbjct: 376 VVVSQVLVADINIGYEDIVNTQVLALNGKPVKNLKSLANMVESCDDEFLKFDLEYQQIVV 435

Query: 117 LERQAANAALSSILRDYGIRCERSPDL 143
           L  + A AA   IL  + I  + S DL
Sbjct: 436 LRTKTAKAATLDILTTHCIPSKMSDDL 462


>GSVIVT01022768001 assembled CDS
          Length = 282

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 1/48 (2%)

Query: 13  LIIAGLVFTPLSEPLIDAEGEDSMGLKLLAKARYSLSRFKGEQIVILS 60
           +II+G +FT  SEPLI+ E ED++GLKLL KA+Y L+R KGEQ+V  S
Sbjct: 175 VIISGSMFT-FSEPLIEEECEDTIGLKLLTKAQYYLARLKGEQVVTFS 221


>GSVIVT01024782001 assembled CDS
          Length = 121

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 27/30 (90%)

Query: 31 EGEDSMGLKLLAKARYSLSRFKGEQIVILS 60
          + ED++GLKLL KARYSL+RFKG+QIVI S
Sbjct: 2  KCEDTIGLKLLTKARYSLARFKGKQIVIFS 31