Jatropha Genome Database

JcCA0271341.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271341.20 - phase: 2 /TE/partial
         (617 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012382001 assembled CDS                                       166   3e-41
GSVIVT01013341001 assembled CDS                                       164   8e-41
GSVIVT01031724001 assembled CDS                                       147   2e-35
GSVIVT01000641001 assembled CDS                                       137   1e-32
GSVIVT01028343001 assembled CDS                                       114   1e-25
GSVIVT01013655001 assembled CDS                                       109   3e-24
GSVIVT01009548001 assembled CDS                                        85   8e-17
GSVIVT01031819001 assembled CDS                                        52   1e-06

>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 100/138 (72%)

Query: 417 ISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGHLKIEAYTDADWAGSLDDRR 476
           +SLVSQYMH P   HL  V RIL YLK    RGI+  ++GH  I  ++D+DWAG+  DRR
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810

Query: 477 STSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDLKYSNSGT 536
           ST+GYC FVGGNLV+W+SKKQ VVARSSAEAEYR+MA    EM+W++ L+ DL +S +  
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870

Query: 537 SILLCDNKAAISIAQNLV 554
             L CDN+AA+ IA N V
Sbjct: 871 MKLFCDNQAAMHIAANPV 888


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 93/109 (85%)

Query: 424 MHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGHLKIEAYTDADWAGSLDDRRSTSGYCT 483
           MH P+++H+  V++IL YLK  PR+G+ F KH   KIEA+TDADWAGS++DRRSTSGYCT
Sbjct: 1   MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60

Query: 484 FVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDLKYS 532
           FV GNL+TWRSKKQNVVARSSAE ++RS+A G+ E+LW+++++E+LK +
Sbjct: 61  FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKIT 109


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 107/174 (61%), Gaps = 1/174 (0%)

Query: 357  YVLDLLEETCMLGCKASDSPIEVNHRLQ-AGVWKIVDLGQYQRLVGRLIYLSHTRPDIAY 415
            Y+ DLL+   +   K   SP+ V H L  A   +  D   Y+ LVG L Y + TRPDIAY
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 416  AISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGHLKIEAYTDADWAGSLDDR 475
             I+   Q+MH P  +HL+AV R+L YLK +   G+ F     L + AYTDAD A   DDR
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDR 1069

Query: 476  RSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDL 529
            RST+GYC F  GNL++W + KQ VV+RSS E++YR +A    E+ W++ L+++L
Sbjct: 1070 RSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKEL 1123


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 103/166 (62%)

Query: 389 KIVDLGQYQRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRR 448
           K VD   Y+++VG L+YL+ TRPDI +++SL+S+YM  P + H  A  +I  YL+     
Sbjct: 229 KKVDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKDF 288

Query: 449 GILFSKHGHLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAE 508
           G+ + K     +  +TD+D+AG  D+RRSTSGY   +G   V+W SKKQ +V  S+ EAE
Sbjct: 289 GLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEAE 348

Query: 509 YRSMALGVSEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
           + +  +   + +W+RK++E+L     G + + CDN + I +++N V
Sbjct: 349 FVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPV 394


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 474  DRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDLKYSN 533
            DRRSTSGYC F+GGNL++W+SKKQ+VVARSSAEAEYR+MAL   E++W+R L+++L++  
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525

Query: 534  SGTSILLCDNKAAISIAQNLV 554
                 L+CDN+AA+ IA N V
Sbjct: 1526 DEQMKLICDNQAALHIASNPV 1546


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 76/127 (59%)

Query: 420  VSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGHLKIEAYTDADWAGSLDDRRSTS 479
            +SQ+MH P   H  AV R+L YL      GI   +   L + A++D+DWAG+ DD  STS
Sbjct: 4258 LSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTS 4317

Query: 480  GYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVSEMLWVRKLIEDLKYSNSGTSIL 539
             Y  ++G N ++W SKKQ  VARSS EAEYRS+A   +E+ W+  L+ +L  +     ++
Sbjct: 4318 AYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVI 4377

Query: 540  LCDNKAA 546
             CDN  A
Sbjct: 4378 YCDNVGA 4384


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 93/160 (58%), Gaps = 3/160 (1%)

Query: 396 YQRLVGRLIYLSH-TRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSK 454
           Y   +G L+Y     RP+I + ++++ +Y+      H  A  +++ YL+      +++ +
Sbjct: 596 YASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRR 655

Query: 455 HGHLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMAL 514
             +L++  Y+++D+ G  DD +STSGY   + G  ++W+S KQ+++A S+  A++ +   
Sbjct: 656 VDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYG 715

Query: 515 GVSEMLWVRKLIEDLKYSNS--GTSILLCDNKAAISIAQN 552
             S+++W+RKLI +L+  +S     ++ CDN A +  ++N
Sbjct: 716 ASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKN 755


>GSVIVT01031819001 assembled CDS
          Length = 149

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 431 HLEAVFRILGYLKSAPRRGILFSKHGHLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLV 490
           H EAV  +L YL+   +    F + G LK++ Y D D++  +D+ +ST GY   +G   +
Sbjct: 68  HYEAVKWMLRYLQGTTKNCPCF-RRGELKLQGYVDIDFSNEIDNWKSTIGYVFTLGTTAI 126

Query: 491 TWRSKKQNVVARSSAEAEYRSM 512
           +W S+ Q +V  S+ + +Y +M
Sbjct: 127 SWISQLQKIVVLSTIKVKYVAM 148