Jatropha Genome Database

JcCA0270791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270791.10 + phase: 0 /partial
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029255001 assembled CDS                                       184   2e-47
GSVIVT01021366001 assembled CDS                                        56   1e-08
GSVIVT01021365001 assembled CDS                                        50   5e-07
GSVIVT01038687001 assembled CDS                                        50   8e-07
GSVIVT01007586001 assembled CDS                                        49   1e-06
GSVIVT01000580001 assembled CDS                                        49   2e-06
GSVIVT01014625001 assembled CDS                                        48   3e-06
GSVIVT01009946001 assembled CDS                                        47   4e-06
GSVIVT01011381001 assembled CDS                                        47   5e-06
GSVIVT01010634001 assembled CDS                                        46   9e-06

>GSVIVT01029255001 assembled CDS
          Length = 268

 Score =  184 bits (468), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 113/176 (64%)

Query: 13  LDGDPREHLFTVDDFESDIGGSQIKFRIKNLIKKSDAGVTILNGINLDXXXXXXXXXXXX 72
           LD  P      +   E + G  + KFR++NLIK S++G  IL GI++D            
Sbjct: 9   LDSSPAVEPLILQVEEEEDGERKPKFRVRNLIKVSESGEAILRGIDVDVPKGAIVGVIGP 68

Query: 73  XXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXXXXXMLFQVPALFEGTVADNI 132
                STLLR LNRLWEPPSGTV+                   MLFQ+P LFEGTVADNI
Sbjct: 69  SGSGKSTLLRVLNRLWEPPSGTVYLDGTDIRELDVLGLRRKVGMLFQLPVLFEGTVADNI 128

Query: 133 RYGPQLRGKKLTDHEVHKLLKLADLDSTFHKKNGSELSVGQAQRVALARTLANEPE 188
           RYGPQLRGKKLTD+EV KLL LADLDS+F KK G ELSVGQAQRVALARTLANEPE
Sbjct: 129 RYGPQLRGKKLTDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANEPE 184


>GSVIVT01021366001 assembled CDS
          Length = 2405

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)

Query: 51  VTILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXX 110
           V I +G +L+                 ST++  L R ++P +G V               
Sbjct: 375 VQIFSGFSLNIPSGTTAALVGQSGSGKSTVISLLERFYDPEAGEVLIDGVNLKKINLRWI 434

Query: 111 XXXXXMLFQVPALFEGTVADNIRYGPQLRGKKLTDHEVHKLLKLAD-----------LDS 159
                ++ Q P LF  T+ +NI YG +    K TD E+   +KLA+           LD 
Sbjct: 435 RGKIGLVSQEPILFAATIKENISYGKE----KATDEEIRTAIKLANAAKFIDKMPTGLD- 489

Query: 160 TFHKKNGSELSVGQAQRVALARTLANEP 187
           T   ++G++LS GQ QR+A+AR +   P
Sbjct: 490 TMVGEHGTQLSGGQKQRIAIARAILKNP 517



 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)

Query: 51   VTILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXX 110
            V I  G +L                  ST++  L R ++P +G V               
Sbjct: 1537 VQIFGGFSLHIPSRTTAALVGQSGSGKSTVISLLERFYDPEAGEVLIDGVNLKKLNIRSI 1596

Query: 111  XXXXXMLFQVPALFEGTVADNIRYGPQLRGKKLTDHEVHKLLKLADLDSTFHK------- 163
                 ++ Q P LF GT+ +NI YG     K  T+ E+   ++L++     +K       
Sbjct: 1597 REKIGLVSQEPILFAGTIKENISYGK----KDATNEEIRAAIELSNSARFINKLQRGLDT 1652

Query: 164  ---KNGSELSVGQAQRVALARTLANEP 187
               ++G++LS GQ QR+A+AR +   P
Sbjct: 1653 MVGEHGTQLSGGQKQRIAIARAILKNP 1679


>GSVIVT01021365001 assembled CDS
          Length = 1930

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 51  VTILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXX 110
           V I +GI+L                  ST++  L R ++P SG V               
Sbjct: 371 VQIFSGISLHVPSGKTAALVGQSGSGKSTVISLLERFYDPHSGEVLIDGVDLKQLQLKWI 430

Query: 111 XXXXXMLFQVPALFEGTVADNIRYGPQLRGKKLTDHEVHKLLKLAD-----------LDS 159
                ++ Q P LF  T+ +NI YG +      +D E+   + LA+           LD 
Sbjct: 431 REKIGLVSQEPILFATTIKENISYGKE----DASDEEIRTAIVLANAAKFIDKLPKGLD- 485

Query: 160 TFHKKNGSELSVGQAQRVALARTLANEP 187
           T   ++G++LS GQ QR+A+AR +   P
Sbjct: 486 TMVGEHGTQLSGGQKQRIAIARAILKNP 513



 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 16/163 (9%)

Query: 37   KFRIKNLIKKSDA--GVTILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGT 94
            +  +KN+  K  A   V I +G +L                  ST++  L R ++P +G 
Sbjct: 1362 EIELKNVYFKYPARPDVQIFSGFSLSVPSGKTAALVGQSGSGKSTVISLLERFYDPDAGE 1421

Query: 95   VFXXXXXXXXXXXXXXXXXXXMLFQVPALFEGTVADNIRYGPQLRGKKLTDHEVHKLLKL 154
            V                    ++ Q P LF   + +NI YG     K+ TD E+ + ++ 
Sbjct: 1422 VLIDGVNLKKFRLGWIREKIGLVSQEPILFGARIKENISYGK----KEATDEEIREAIER 1477

Query: 155  ADLDSTFHK----------KNGSELSVGQAQRVALARTLANEP 187
            A+      K          ++G++LS GQ QR+A+AR +   P
Sbjct: 1478 ANAAKFIDKLPLGIETMVGEHGTQLSEGQKQRIAIARAILKNP 1520


>GSVIVT01038687001 assembled CDS
          Length = 1157

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 78  STLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXXXXXMLFQVPALFEGTVADNIRYGP- 136
           ST++  + R ++P  G +                     +FQ P+LF GT+ DNI+ G  
Sbjct: 404 STVISLVARFYDPSQGEILIDNYNIKDLDLKFLRKNIGAVFQEPSLFSGTIKDNIKVGSM 463

Query: 137 -----QLRGKKLTDHEVHKLLKLADLDSTFHKKNGSELSVGQAQRVALARTLANEP 187
                +++   L  +    + +L D  ST   + G +LS GQ QR+A+AR +   P
Sbjct: 464 EADDQEVQNVALMANAHSFITQLPDQYSTEVGERGVQLSGGQKQRIAIARAIIKNP 519


>GSVIVT01007586001 assembled CDS
          Length = 1091

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 6/141 (4%)

Query: 53  ILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXX 112
           IL G++L                  ST++R + R ++P  G++                 
Sbjct: 846 ILMGVSLKVDAGKVVALVGQSGSGKSTVIRMIERFYDPSKGSIEVDGIDIKHYNLRALRL 905

Query: 113 XXXMLFQVPALFEGTVADNIRYGPQLRGKK-----LTDHEVHKLLK-LADLDSTFHKKNG 166
              ++ Q P LF GT+ +NI Y  +   +       T    H+ +  + D  +T+  + G
Sbjct: 906 HIALVSQEPTLFAGTIQENIAYAKENASEAEIIEAATVANAHEFISSMKDGYATYCGERG 965

Query: 167 SELSVGQAQRVALARTLANEP 187
            +LS GQ QR+ALAR +   P
Sbjct: 966 VQLSGGQKQRLALARAILKNP 986


>GSVIVT01000580001 assembled CDS
          Length = 1025

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 78  STLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXXXXXMLFQVPALFEGTVADNIRYG-- 135
           ST++  + R ++P +G+V                    ++ Q P LF GT+ +NI YG  
Sbjct: 821 STVIGLIERFYDPLNGSVQIDQHDIRSYNLRKLRSHIALVSQEPILFAGTIYENIVYGKE 880

Query: 136 ----PQLRGKKLTDHEVHKLLKLADLDSTFHKKNGSELSVGQAQRVALARTLANEP 187
                ++R   L  +    +  + D   T+  + G +LS GQ QR+ALAR +   P
Sbjct: 881 NATEAEIRRAALLANAHEFISSMKDGYKTYCGERGVQLSGGQKQRIALARAILKNP 936


>GSVIVT01014625001 assembled CDS
          Length = 976

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 14/145 (9%)

Query: 53  ILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXX 112
           IL G++L                  ST++  + R ++P  G++                 
Sbjct: 747 ILKGLSLKIEAGRTVALVGQSGSGKSTIIGLIERFYDPLRGSIHIDELDIKNHNLRILRS 806

Query: 113 XXXMLFQVPALFEGTVADNIRYGPQLRGKKLTDHEVHKLLKLA----------DLDSTFH 162
              ++ Q P LF  T+ +NI YG +      T+ E+ K   LA          D   T+ 
Sbjct: 807 NIALVSQEPTLFAATIRENIAYGKE----NATESEIRKAAVLANAHEFISGMKDGYDTYC 862

Query: 163 KKNGSELSVGQAQRVALARTLANEP 187
            + G +LS GQ QRVA+AR +   P
Sbjct: 863 GERGVQLSGGQKQRVAIARAILKNP 887


>GSVIVT01009946001 assembled CDS
          Length = 1045

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 78  STLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXXXXXMLFQVPALFEGTVADNIRYGPQ 137
           ST++  + R +EP SG +                    ++ Q PALF  T+A NI YG +
Sbjct: 430 STIISMVQRFYEPTSGKILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNILYGKE 489

Query: 138 -------LRGKKLTDHEVHKLLK-LADLDSTFHKKNGSELSVGQAQRVALARTLANEPE 188
                  +   K  +   H  ++ L D   T   + G++LS GQ QR+A+AR +   P+
Sbjct: 490 DADMDQVIEAAKAAN--AHSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 546


>GSVIVT01011381001 assembled CDS
          Length = 1088

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 18/183 (9%)

Query: 5    SILQSQTSLDGDPREHLFTVDDFESDIGGSQIKFRIKNLIKKSDAGVTILNGINLDXXXX 64
            SIL   T +D D  +     +  ES  G  +I+ R  +    S + +T+   +NL     
Sbjct: 866  SILDRSTKIDPDDSD----AEPVESIRG--EIELRHVDFSYPSRSDITVFKDLNLRIRAG 919

Query: 65   XXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXXXXXXXMLFQVPALF 124
                         S+++  + R ++P +G V                    ++ Q PALF
Sbjct: 920  QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDVRRLNLKSLRLKIGLVQQEPALF 979

Query: 125  EGTVADNIRYGPQLRGKKLTDHEVHKLLKLADLDSTFHKKNGSELSVGQAQRVALARTLA 184
              ++ DNI YG        T+ EV +  + A+         G +LS GQ QR+A+AR + 
Sbjct: 980  AASILDNIAYGKD----GATEAEVIEAARAAN--------RGVQLSGGQKQRIAIARAVL 1027

Query: 185  NEP 187
             +P
Sbjct: 1028 KDP 1030


>GSVIVT01010634001 assembled CDS
          Length = 717

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 51  VTILNGINLDXXXXXXXXXXXXXXXXXSTLLRSLNRLWEPPSGTVFXXXXXXXXXXXXXX 110
           V ILNG+NL                  ST+++ L R +EP  G +               
Sbjct: 488 VEILNGLNLRLKCGTVTALVGSSGAGKSTIVQLLARFYEPSRGCITVSGEDVRTFDKSEW 547

Query: 111 XXXXXMLFQVPALFEGTVADNIRYGPQLRGKKLTDHEVHKLLKLADLDS----------T 160
                ++ Q P LF  +V +NI YG  L    ++  +V K  K A+             T
Sbjct: 548 ARVVSIVNQEPVLFSVSVGENIAYG--LPDNNVSKDDVIKAAKAANAHDFIISLPQGYDT 605

Query: 161 FHKKNGSELSVGQAQRVALART-LANEP 187
              + G  LS GQ QR+A+AR  L N P
Sbjct: 606 LVGERGGLLSGGQRQRIAIARALLKNAP 633