Jatropha Genome Database

JcCA0270701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270701.10 + phase: 2 /pseudo/partial
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018976001 assembled CDS                                       311   1e-85
GSVIVT01032470001 assembled CDS                                        92   2e-19

>GSVIVT01018976001 assembled CDS
          Length = 670

 Score =  311 bits (798), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 148/153 (96%), Positives = 153/153 (100%)

Query: 51  MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISET 110
           MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPP+VLKERLPGISET
Sbjct: 352 MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISET 411

Query: 111 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAACAS 170
           AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEV+T+KGNDPDAVVPGLMAAGEAACAS
Sbjct: 412 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTIKGNDPDAVVPGLMAAGEAACAS 471

Query: 171 VHGANRLGANSLLDIVVFGRACANRVAEINRPG 203
           VHGANRLGANSLLDIVVFGRACANRVAEI++PG
Sbjct: 472 VHGANRLGANSLLDIVVFGRACANRVAEIHKPG 504


>GSVIVT01032470001 assembled CDS
          Length = 618

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 19/143 (13%)

Query: 51  MERYAP---TAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGI 107
           MER+ P      +LA RDVV+RS+  ++++       + ++ L ++H P + +    P I
Sbjct: 355 MERFMPLYDERAELAPRDVVARSIDDQLKKRN-----EKYVLLDISHKPKEKILSHFPNI 409

Query: 108 SETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAA 167
           +     + G+D+T++PIPV+P  HY  GG+     GE            V GL  AGE A
Sbjct: 410 AAECLKY-GLDITRQPIPVVPAAHYMCGGVRAGLQGETN----------VRGLYVAGEVA 458

Query: 168 CASVHGANRLGANSLLDIVVFGR 190
           C  +HGANRL +NSLL+ +VF R
Sbjct: 459 CTGLHGANRLASNSLLEALVFAR 481