Jatropha Genome Database
- JcCA0270671.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0270671.10 - phase: 0
(480 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01007910001 assembled CDS 574 e-164
GSVIVT01012198001 assembled CDS 571 e-163
GSVIVT01011507001 assembled CDS 302 3e-82
>GSVIVT01007910001 assembled CDS
Length = 330
Score = 574 bits (1479), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/480 (62%), Positives = 325/480 (67%), Gaps = 150/480 (31%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVARITAWNSEQLPIYEPGLDGVVKE 60
MVKICCIGAGY +
Sbjct: 1 MVKICCIGAGY------------------------------------------------Q 12
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRG+NLFFST+VEKH+SEADI+FVSVNTPTKT+GLGAGKAADLTYWESAARMIADV
Sbjct: 13 CRGRNLFFSTNVEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV---- 68
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFHPDRVLIGGRE 180
KGI++QILSNPEFLAE
Sbjct: 69 -------------------------KGISYQILSNPEFLAE------------------- 84
Query: 181 TPEGQKAIETLKGVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
ELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 85 --------------------------------ELSKLAANAFLAQRISSVNAMSALCEAT 112
Query: 241 GADVAEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300
GADV+EVSHA+GKD+RIGPKFLNASVGFGGSCFQKDILNL+YICECNGLPEVANYWKQVI
Sbjct: 113 GADVSEVSHAIGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEVANYWKQVI 172
Query: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQL 360
KVNDYQK RFVNRVV+SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 173 KVNDYQKNRFVNRVVASMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKASL 232
Query: 361 SIYDPQVSEDQIQRDLSMKKFDWDHPIHLQPMSPTGVKQVSCVWDAYEATKDAHGICILT 420
SIYDPQV+ DQIQR++SM KFDWDHP AT+DAHGICILT
Sbjct: 233 SIYDPQVTGDQIQREISMNKFDWDHP----------------------ATRDAHGICILT 270
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDVEKLRQIGFIVYSIGKPLDAWLKDMPAVA 480
EWDEFKTLDYQRI++NMQKPAFVFDGRN+V++EKLR+IGFIVYSIGKPLD WLKDMPA+A
Sbjct: 271 EWDEFKTLDYQRIFNNMQKPAFVFDGRNIVNIEKLREIGFIVYSIGKPLDPWLKDMPAIA 330
>GSVIVT01012198001 assembled CDS
Length = 303
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 290/369 (78%), Positives = 296/369 (80%), Gaps = 66/369 (17%)
Query: 112 MIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFHP 171
MIADVSKSDKI ILSNPEFLAEGTAIQDL
Sbjct: 1 MIADVSKSDKI-----------------------------ILSNPEFLAEGTAIQDL--- 28
Query: 172 DRVLIGGRETPEGQKAIETLKGVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVN 231
VYAHWVPVE+IICTNLWSAELSKLAANAFLAQRISSVN
Sbjct: 29 ---------------------DVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVN 67
Query: 232 AMSALCEATGADVAEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPE 291
AMSALCEATGADV EVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPE
Sbjct: 68 AMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPE 127
Query: 292 VANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 351
VANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK
Sbjct: 128 VANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 187
Query: 352 GLLGDKAQLSIYDPQVSEDQIQRDLSMKKFDWDHPIHLQPMSPTGVKQVSCVWDAYEATK 411
GLLGDKA LSIYDPQ KFDWDHPIHLQP+SPT VKQVS VWDAY ATK
Sbjct: 188 GLLGDKAHLSIYDPQ-------------KFDWDHPIHLQPLSPTSVKQVSVVWDAYTATK 234
Query: 412 DAHGICILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDVEKLRQIGFIVYSIGKPLDA 471
DAHGICILTEWDEFK+LDY++IYDNMQKPAFVFDGRNVVD EKLR+IGFIVYSIGKPLDA
Sbjct: 235 DAHGICILTEWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDA 294
Query: 472 WLKDMPAVA 480
WLKDMPAVA
Sbjct: 295 WLKDMPAVA 303
>GSVIVT01011507001 assembled CDS
Length = 280
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/266 (62%), Positives = 177/266 (66%), Gaps = 78/266 (29%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVARITAWNSEQLPIYEPGLDGVVKE 60
MVKICCIGAGY +
Sbjct: 1 MVKICCIGAGY------------------------------------------------Q 12
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120
CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVSKSD
Sbjct: 13 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 72
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFHPDRVLIGGRE 180
KIVVEKSTVPVKTAEAIEKILTHNSKGI +E
Sbjct: 73 KIVVEKSTVPVKTAEAIEKILTHNSKGI------------------------------KE 102
Query: 181 TPEGQKAIETLKGVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
TPEGQKAI+ LK VYAHWVP ++I+ TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 103 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 162
Query: 241 GADVAEVSHAVGKDTRIGPKFLNASV 266
GADV +VS+AVG DTRIGP + V
Sbjct: 163 GADVTQVSYAVGTDTRIGPNIYDPQV 188
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 93/120 (77%), Gaps = 21/120 (17%)
Query: 361 SIYDPQVSEDQIQRDLSMKKFDWDHPIHLQPMSPTGVKQVSCVWDAYEATKDAHGICILT 420
+IYDPQV+EDQIQRDL+M VWDAY ATKDAHGICILT
Sbjct: 182 NIYDPQVTEDQIQRDLTMNNM---------------------VWDAYSATKDAHGICILT 220
Query: 421 EWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDVEKLRQIGFIVYSIGKPLDAWLKDMPAVA 480
EWDEFKTLDY++IYDNMQKPAFVFDGRN+V+ EKLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct: 221 EWDEFKTLDYKKIYDNMQKPAFVFDGRNIVNAEKLREIGFIVYSIGKPLDPWLKDMPAVA 280