Jatropha Genome Database

JcCA0270361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270361.10 + phase: 2 /partial
         (230 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025526001 assembled CDS                                       259   6e-70
GSVIVT01025029001 assembled CDS                                       172   1e-43
GSVIVT01016599001 assembled CDS                                       143   8e-35
GSVIVT01025615001 assembled CDS                                       135   2e-32
GSVIVT01033711001 assembled CDS                                        91   5e-19
GSVIVT01031451001 assembled CDS                                        85   4e-17
GSVIVT01031452001 assembled CDS                                        84   5e-17

>GSVIVT01025526001 assembled CDS
          Length = 841

 Score =  259 bits (663), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/230 (60%), Positives = 160/230 (69%), Gaps = 26/230 (11%)

Query: 1   LEIPKHASSSGIRKITFKFSKRKEDYDSQIAPSVAQPVGNEICQEQFYKKEYGKHYSACA 60
           LEIPKH SS+GIRKITFKFSK KE Y+                             + C 
Sbjct: 135 LEIPKHVSSTGIRKITFKFSKSKEAYN-----------------------RTNMRVNTCW 171

Query: 61  EMLENTDRYFCAPNMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE--LYGI 118
             LE  + +F APNMELKMSKKVVP +YPTNVKKLLSTGILDGA VKY+S  RE  L G+
Sbjct: 172 N-LETRNLHFRAPNMELKMSKKVVPKSYPTNVKKLLSTGILDGALVKYISTSREKELQGV 230

Query: 119 IEGGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLS 178
           I   GYLCGCS CNF+KVL+A+EFE+HAG RTRHPNNHI+LENGKPI SIIQ+LKTAPLS
Sbjct: 231 IRESGYLCGCSACNFTKVLTAYEFEQHAGGRTRHPNNHIYLENGKPIYSIIQQLKTAPLS 290

Query: 179 ALGEVIKDVAGSSINGELFEIWKASFQQRNGMAGADRKCYSMLPRSPSSL 228
            L EVIK++AGSS+N E F+ WKASF Q NG+  AD   ++ L   P S+
Sbjct: 291 DLDEVIKNIAGSSVNMECFKAWKASFHQNNGVTEADENYHAQLLNHPQSI 340


>GSVIVT01025029001 assembled CDS
          Length = 416

 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 102/131 (77%), Gaps = 1/131 (0%)

Query: 76  ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-LYGIIEGGGYLCGCSLCNFS 134
           E KMSKK  PN++P+NV+ L+STG+LDG  VKY+S  RE L+GII+G GYLCGC  CNF+
Sbjct: 269 EFKMSKKEAPNSFPSNVRTLISTGMLDGVPVKYVSLSREELHGIIKGSGYLCGCQSCNFN 328

Query: 135 KVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSING 194
           KVL+A+EFE+HAG +T+HPNNHI+ ENGK I  I+QEL++ P S L + I+ V GS IN 
Sbjct: 329 KVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDAIQTVTGSPINQ 388

Query: 195 ELFEIWKASFQ 205
           + F IWK SFQ
Sbjct: 389 KSFRIWKESFQ 399


>GSVIVT01016599001 assembled CDS
          Length = 612

 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 91/128 (71%), Gaps = 2/128 (1%)

Query: 80  SKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE--LYGIIEGGGYLCGCSLCNFSKVL 137
           +KK   +++P NVK LLSTG+ DG  VKY+S  RE  + G+I+G GYLC C  CN S  L
Sbjct: 464 TKKDPSSHFPLNVKSLLSTGMFDGVPVKYVSWTREKSVRGVIKGSGYLCSCKDCNSSNCL 523

Query: 138 SAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSINGELF 197
           +A+EFE+HA  +T+HPNNHI+ ENGK I +++QELK  P   L EVI++V G  IN + F
Sbjct: 524 NAYEFERHANCKTKHPNNHIYFENGKTIYAVVQELKNTPQDKLFEVIQNVTGCPINQKNF 583

Query: 198 EIWKASFQ 205
           + WKAS+Q
Sbjct: 584 QTWKASYQ 591


>GSVIVT01025615001 assembled CDS
          Length = 127

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 82/107 (76%), Gaps = 2/107 (1%)

Query: 100 ILDGARVKYLSPGRE--LYGIIEGGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHI 157
           +LDG  VKY++  RE  L GII+G GYLCGC  CNFSKV++A+EFE+HAG +T+HPNNHI
Sbjct: 1   MLDGVPVKYIAWSREKELRGIIKGSGYLCGCQSCNFSKVINAYEFERHAGCKTKHPNNHI 60

Query: 158 HLENGKPICSIIQELKTAPLSALGEVIKDVAGSSINGELFEIWKASF 204
           + ENGK I  I+QELK+ P ++L +VI+ + GS IN + F +WK SF
Sbjct: 61  YFENGKTIYGIVQELKSTPQNSLFDVIQTITGSPINQKSFRLWKESF 107


>GSVIVT01033711001 assembled CDS
          Length = 879

 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/116 (42%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 77  LKMSKKVVPNNYPTNVKKLLSTGILDGARVKY--LSPGRELYGIIEGGGYLCGCSLCNFS 134
           LKMSKK+  N  P  ++ LL TG+L+G  V Y     G  L G I+G G LC CSLC  S
Sbjct: 230 LKMSKKIALNKVPLTIRDLLETGMLEGYPVTYDGRKKGYRLQGTIKGNGILCSCSLCKGS 289

Query: 135 KVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGS 190
           +V+   +FE HA    RH   +I+L+NGK +  ++   K APL  L   I+   GS
Sbjct: 290 RVVLPSQFELHACKSYRHAAKYIYLDNGKNLHDVLHVCKDAPLETLEATIQSAIGS 345


>GSVIVT01031451001 assembled CDS
          Length = 824

 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 7/116 (6%)

Query: 84  VPNNYPTNVKKLLSTGILDGARVKYLSPGRE-------LYGIIEGGGYLCGCSLCNFSKV 136
           VP  +P  +K+LL TGIL+   V+Y+   R        L G+I+G G LC C+ C  +KV
Sbjct: 204 VPRRFPAKLKELLDTGILEDLPVQYIRGSRTRGSGESGLRGVIKGSGILCSCNSCKGTKV 263

Query: 137 LSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSI 192
           ++ + FE HAGS  + P  +I+LENG  +  ++   K A L +L E I+   G S+
Sbjct: 264 VTPNLFELHAGSSNKRPPEYIYLENGTSLRGVMNAWKNAALDSLDEAIRVAIGCSM 319


>GSVIVT01031452001 assembled CDS
          Length = 772

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 10/128 (7%)

Query: 80  SKKVVPNN---YPTNVKKLLSTGILDGARVKYLSPGRE-------LYGIIEGGGYLCGCS 129
           S  +VP+    +PT +K+LL TGIL+   V+Y+   R        L+G+I+G G LC C 
Sbjct: 263 SSALVPSTLKGFPTKLKELLDTGILEDLPVQYIRGLRRKENGESGLHGVIKGSGILCYCD 322

Query: 130 LCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAG 189
            C  + V++ + FE HAGS  + P  +I+LENG  + S++     A L AL E I+   G
Sbjct: 323 TCKGTNVVTPNVFELHAGSSNKRPPEYIYLENGNTLRSVMTACSKATLKALDEDIRVAIG 382

Query: 190 SSINGELF 197
           SSI    F
Sbjct: 383 SSIKKSTF 390