Jatropha Genome Database

JcCA0270011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270011.10 - phase: 1 /pseudo/partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012247001 assembled CDS                                       149   2e-36

>GSVIVT01012247001 assembled CDS
          Length = 498

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 123/234 (52%), Gaps = 11/234 (4%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEEKSVYNS------NGQFVSKSFLRLHGNGIQNTSGI 100
           +L G +  PD +  +N  R +KLE++ +Y+S      +GQ   KSFL L+G   Q   G 
Sbjct: 265 ILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIPISGQLPPKSFLHLYGTERQCPPGF 324

Query: 101 CPSATDEFTRLNTASTVHELAGVXXXXXXXXXXXXXXQDLS-HSAGIIMARPSISQANRS 159
             S T++ T    ASTV EL GV              QDLS H  GI MA P   Q   +
Sbjct: 325 LSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPMANPPTVQGCHA 384

Query: 160 HHS-VGISDKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVSYAGE---LQVEPDGFL 215
           H+S V  SDKP G+ SLEK+  NG +SS +N  +   MG   +   G     +V  +   
Sbjct: 385 HYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNAVSFEVRTNRNF 444

Query: 216 QESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVEDFSSFLTT 269
           Q SD LNAKY  S E   TVDLLQLSSHL RVE QRN   VK E +DF  F TT
Sbjct: 445 QGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDFHCFPTT 498