Jatropha Genome Database

JcCA0269951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269951.10 + phase: 0 /partial
         (50 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007735001 assembled CDS                                        58   8e-10
GSVIVT01023862001 assembled CDS                                        57   1e-09

>GSVIVT01007735001 assembled CDS
          Length = 988

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 31/34 (91%)

Query: 1   AVIFVDNSGADIILGILPFARELLRRGTQVCFIS 34
           A++FVDNSGAD+ILG+LP ARELLRRGT+V  ++
Sbjct: 814 ALLFVDNSGADVILGMLPLARELLRRGTEVVLVA 847


>GSVIVT01023862001 assembled CDS
          Length = 367

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/29 (89%), Positives = 28/29 (96%)

Query: 2   VIFVDNSGADIILGILPFARELLRRGTQV 30
           +IFVDNSGADIILGILPFARELLR G+QV
Sbjct: 216 IIFVDNSGADIILGILPFARELLRCGSQV 244