Jatropha Genome Database

JcCA0269931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269931.10 - phase: 0 /pseudo
         (263 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026897001 assembled CDS                                       291   2e-79
GSVIVT01019077001 assembled CDS                                        97   1e-20
GSVIVT01012004001 assembled CDS                                        50   1e-06

>GSVIVT01026897001 assembled CDS
          Length = 348

 Score =  291 bits (746), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 134/146 (91%), Positives = 142/146 (97%)

Query: 90  IRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGDLAENA 149
           +RRCVELARKAIGCTSPNPMVGCVIVKDGK+VGEGFHPKAGQPH EVFALRDAGDLAENA
Sbjct: 1   MRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDLAENA 60

Query: 150 TAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSGLDRLRDAGIDVTFGI 209
           TAYVSLEPCNHYGRTPPCTEALIKAK++KVVIGMVDPNPIVAS G+DRLRDAGI+VT  +
Sbjct: 61  TAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEVTVAV 120

Query: 210 EEELCKRLNEAYIHQMLTGKPFVTLR 235
           EEELCK+LNEAYIHQMLTGKPFVTLR
Sbjct: 121 EEELCKKLNEAYIHQMLTGKPFVTLR 146


>GSVIVT01019077001 assembled CDS
          Length = 586

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 86  DGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGDL 145
           D F++RR  E+A K+ G TSP+P  GCVI   GK+VGEG+    G   AEV A+  AG+L
Sbjct: 24  DSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGEL 83

Query: 146 AENATAYVSLEPCN-HYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSGLDRLRDAGID 204
              ATAY+++EP + H  RT     AL+KA I + V+G+  P   + S  L  +R  G+ 
Sbjct: 84  CRGATAYLNMEPGDCHGDRT--AVSALVKAGITRAVVGIRHPLQHLRSHALRAMRSEGLQ 141

Query: 205 VTFGIEEELCKRLNEAYIHQMLTGKPFVTLR*QQYPYLII 244
           V    E+   K + EA    ++   P +     + P+ ++
Sbjct: 142 VDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVL 181


>GSVIVT01012004001 assembled CDS
          Length = 1151

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%)

Query: 84   KDDGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHP----KAGQPHAEVFAL 139
            K D  ++R  +  A+KA    +    VG V+V+ GKI+  G +     +    HAE+  +
Sbjct: 948  KIDEMFMREALLEAKKA--ANAWEVPVGAVLVQHGKIIARGCNRVEELRDSTAHAEMICI 1005

Query: 140  RDAGDLAEN-----ATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSG 194
            R+A +L         T YV+LEPC      P C  A+++A+I  +V G   PN ++ + G
Sbjct: 1006 REASNLLRTWRLSETTLYVTLEPC------PMCAGAILQARIDTLVWGA--PNKLLGADG 1057