Jatropha Genome Database

JcCA0269921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269921.10 - phase: 2 /pseudo/partial
         (376 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032803001 assembled CDS                                       451   e-127
GSVIVT01011171001 assembled CDS                                       449   e-126
GSVIVT01024725001 assembled CDS                                       444   e-125
GSVIVT01024726001 assembled CDS                                       442   e-124
GSVIVT01025364001 assembled CDS                                       137   8e-33
GSVIVT01003874001 assembled CDS                                        68   8e-12
GSVIVT01033502001 assembled CDS                                        67   1e-11

>GSVIVT01032803001 assembled CDS
          Length = 449

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 207/268 (77%), Positives = 233/268 (86%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           N++VGH LHSSILVPYHGWRISHRTHHQ HG+VE DESW PL EKIY+ LD +TR +RFT
Sbjct: 182 NSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRSLDTATRTLRFT 241

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           +P PMLAYP YLW RSPGK GSHF+P S+LF P+ERK V+TST+CWS MA LL C  F+ 
Sbjct: 242 LPFPMLAYPLYLWGRSPGKTGSHFDPNSDLFIPNERKDVITSTVCWSAMAALLVCLSFVM 301

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
           GPVQ+LK YGIPYWIFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG  
Sbjct: 302 GPVQMLKLYGIPYWIFVMWLDLVTYLHHHGHEEKLPWYRGKEWSYLRGGLTTLDRDYGVI 361

Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
           NNIHHDIGTHVIHHLFPQIPHYHL+EATKAAKPVLGKYYREPKKSG  PFHL  SL+RS+
Sbjct: 362 NNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYREPKKSGPLPFHLLGSLIRSM 421

Query: 347 REDHYVSDIGEIVYYQTDPELYRIPKSK 374
           ++DHYVSD G++VYYQ DP+L    KS+
Sbjct: 422 KQDHYVSDTGDVVYYQKDPQLPGSQKSE 449


>GSVIVT01011171001 assembled CDS
          Length = 439

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 207/268 (77%), Positives = 234/268 (87%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           N++VGH LHSSILVPYHGWRISHRTHHQ HG+VE DESW PLPE+IYK LD+ TR++RFT
Sbjct: 172 NSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPERIYKNLDVVTRMLRFT 231

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           +P PMLAYPFYLWSRSPGK GSHF+P S+LF P ERK V+TST+CW+ MA LL    F+ 
Sbjct: 232 VPFPMLAYPFYLWSRSPGKTGSHFDPSSDLFVPSERKNVITSTICWTAMAALLVGLSFVM 291

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
           GP+Q+LK YG+PYWIFVMWLDFVTYLHHHGHD KLPWYRGKEWSYLRGGLTT+DRDYG+ 
Sbjct: 292 GPIQMLKLYGVPYWIFVMWLDFVTYLHHHGHDDKLPWYRGKEWSYLRGGLTTLDRDYGWI 351

Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
           NNIHHDIGTHVIHHLFPQIPHYHLIEAT+AAKPVLGKYYREPK SG  PFHL  SL+RS+
Sbjct: 352 NNIHHDIGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKGSGPLPFHLIGSLVRSL 411

Query: 347 REDHYVSDIGEIVYYQTDPELYRIPKSK 374
           ++DHYV+D  EIVYYQ+DP+L     SK
Sbjct: 412 KKDHYVNDTDEIVYYQSDPQLSGSSNSK 439


>GSVIVT01024725001 assembled CDS
          Length = 329

 Score =  444 bits (1142), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/263 (79%), Positives = 230/263 (87%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           N+IVGH LHS ILVPYHGWRISHRTHHQ HG+VE DESWVPLPEK+YK LD STRI RFT
Sbjct: 60  NSIVGHLLHSWILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKMYKNLDNSTRIFRFT 119

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           +P P+ AYP YLW RSPGK+GSHFNP S+LF   ERKAVLTSTLCW +M  LL C  F+ 
Sbjct: 120 VPFPIFAYPMYLWHRSPGKKGSHFNPNSDLFPTSERKAVLTSTLCWCMMVALLVCVSFVV 179

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
           G  QVLK YG+PY +FVMWLDFVTYLHHHG++QKLPWYRGKEWSYLRGGLTTVDRDYG+F
Sbjct: 180 GLPQVLKLYGVPYLVFVMWLDFVTYLHHHGYEQKLPWYRGKEWSYLRGGLTTVDRDYGWF 239

Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
           NNIHHDIGTHVIHHLFPQIPHYHLIEATKAA+PVLGKYYREPKKSG  P HL ++L RSI
Sbjct: 240 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAARPVLGKYYREPKKSGPIPIHLLKNLTRSI 299

Query: 347 REDHYVSDIGEIVYYQTDPELYR 369
           ++DHYVSD G++VYYQTDP LY+
Sbjct: 300 KQDHYVSDTGDVVYYQTDPHLYQ 322


>GSVIVT01024726001 assembled CDS
          Length = 446

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 199/262 (75%), Positives = 230/262 (87%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           N++VGH LHS+ILVPY+GWRISHRTHHQ  G+VE DESWVP PEK+Y+ LD  TR +RFT
Sbjct: 177 NSMVGHLLHSTILVPYNGWRISHRTHHQNQGHVENDESWVPFPEKLYRSLDAKTRTLRFT 236

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           +P PM AYP YLW RSPGKEGSHFNPYS++F   ERKAVLTST+CWS+M  LL    F+ 
Sbjct: 237 LPFPMFAYPLYLWYRSPGKEGSHFNPYSDMFPISERKAVLTSTVCWSIMVALLLVLSFVA 296

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
           GPVQVLK YG+PYW+F+MWLDFVTYL HHG++QKLPWYRGKEWSYLRGGLTTVDRDYG+F
Sbjct: 297 GPVQVLKLYGVPYWVFIMWLDFVTYLQHHGYEQKLPWYRGKEWSYLRGGLTTVDRDYGWF 356

Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
           N+I H+ GTHVIHHLFPQIPHYHLIEAT+AAKPVLGKYYREPKKSG  P HL ++L++S+
Sbjct: 357 NSIQHNTGTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYREPKKSGPIPAHLVKTLIKSM 416

Query: 347 REDHYVSDIGEIVYYQTDPELY 368
           +EDHYVSD G+I+YYQTDPELY
Sbjct: 417 KEDHYVSDTGDILYYQTDPELY 438


>GSVIVT01025364001 assembled CDS
          Length = 412

 Score =  137 bits (345), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 118/221 (53%), Gaps = 21/221 (9%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
           ++ VG  LHSS+LVPY  W+ISHR HH   G++E      PL           T ++  T
Sbjct: 156 DDTVGLILHSSLLVPYFSWKISHRRHHSNTGSLE------PL-----------TLVITLT 198

Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
           +  P L   F +  R   +   H++PY  +++  ER  +  S       + +L+      
Sbjct: 199 LGWP-LYLAFNVSGRPYNRFACHYDPYGPIYSDRERLQIYISDAGIFTASYVLYRLILAK 257

Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
           G   V+  YGIP  I   +L  +TYL H      LP Y   EW +LRG L TVDRDYG  
Sbjct: 258 GLAWVVCMYGIPLLIVNAFLVLITYLQHT--HPTLPHYDSLEWDWLRGALATVDRDYGVL 315

Query: 287 NNIHHDI-GTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYR 326
           N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct: 316 NKVFHNITDTHVAHHLFSTMPHYHAMEATRAIKPILGEYYQ 356


>GSVIVT01003874001 assembled CDS
          Length = 441

 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 25/232 (10%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
            +IVG      ++ PY  WR  H  HH     + +D +W P+   + +E D S  + +  
Sbjct: 179 EDIVGTLAFLPLIYPYEPWRFKHDRHHAKTNMLSEDTAWHPV---LKEEFDSSPTLRKAI 235

Query: 167 I----PL-PMLAYPFYL-WSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLC-WSVMALLL 219
           I    P+ P ++   +L W         HF+   N + P+E K V  S  C ++ MA+  
Sbjct: 236 IYGYGPIRPWMSIAHWLIW---------HFD--LNKYRPNEIKRVKISLACVFAFMAIGW 284

Query: 220 FCSCFIFGPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLT-T 278
               +  G +  +KF+ +P+  +  W+   T +HH      +P+    EW+  +  L  T
Sbjct: 285 PLIIYKTGVMGWIKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSSDEWNAAQAQLNGT 342

Query: 279 VDRDYGFFNNI-HHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPK 329
           V  DY  +  I  H I  H+ HH+ P+IP Y+L  A ++ +   GKY  E +
Sbjct: 343 VHCDYPRWIEILCHYINVHIPHHISPRIPSYNLRAAHQSLQENWGKYLNEAR 394


>GSVIVT01033502001 assembled CDS
          Length = 286

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 11/100 (11%)

Query: 269 WSYLRGGLTTVDRDYGFFNNI-HHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYRE 327
           W Y R        DYG  N + HH   THV HHLF  +PHYH +EATKA KPVLG YY  
Sbjct: 191 WRYSRFACHFDPHDYGILNKVFHHITDTHVAHHLFSTLPHYHAMEATKAIKPVLGDYY-- 248

Query: 328 PKKSGAFPFHLFESLLRSIREDHYVSDIGE----IVYYQT 363
             +    PF  ++++ R  +E  YV   G+    + +YQ 
Sbjct: 249 --QFDGTPF--YKAMWREAKECVYVQSDGDKSKGVFWYQN 284



 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 30/41 (73%)

Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVP 147
           ++ VG  LHSS+LVPY  W+ SHR HH   G++EKDE +VP
Sbjct: 143 DDTVGLILHSSLLVPYFSWKYSHRRHHSNTGSLEKDEVFVP 183