Jatropha Genome Database

JcCA0269021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269021.10 + phase: 0 /pseudo
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011763001 assembled CDS                                       220   4e-58

>GSVIVT01011763001 assembled CDS
          Length = 314

 Score =  220 bits (561), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 101/119 (84%), Positives = 110/119 (92%)

Query: 56  IQPPLHPTYDLKGVIKLALAEDAGDQGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALTE 115
           I+PP HPTYDL+ VIKLALAED GDQGDVTCMATIP DMEVEAHFLAKEDGI+AGIAL E
Sbjct: 3   IKPPSHPTYDLRAVIKLALAEDVGDQGDVTCMATIPDDMEVEAHFLAKEDGIVAGIALAE 62

Query: 116 MIFHEVDPSLKVEWSQKDGDCVHRGLQFGRVSGQAHNIVVAERVALNFMQRMSGIATLT 174
           M+F+EVDPSLKVEWSQKDGD VH+GL+FG+V G+AHNIV AERV LNFMQRMSGIATLT
Sbjct: 63  MVFNEVDPSLKVEWSQKDGDYVHKGLKFGKVHGRAHNIVRAERVVLNFMQRMSGIATLT 121