Jatropha Genome Database

JcCA0268581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0268581.10 + phase: 0 
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035647001 assembled CDS                                       311   2e-85
GSVIVT01009245001 assembled CDS                                       164   4e-41
GSVIVT01025636001 assembled CDS                                       114   6e-26
GSVIVT01022064001 assembled CDS                                        75   3e-14

>GSVIVT01035647001 assembled CDS
          Length = 448

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/313 (53%), Positives = 204/313 (65%), Gaps = 19/313 (6%)

Query: 1   MASIRRTLSPVPRPGTLLNGEVCQVXXXXXXXXXXAQNFS-------TXXXXXXXXXXXX 53
           MASIRRTLSP PR  TLLNGE C V           QN+S                    
Sbjct: 1   MASIRRTLSPAPRDRTLLNGEACSVPSPLSKSSSSTQNYSPEGRLLSPSFSSSDSRLAWY 60

Query: 54  XXQAFVLGVFSPRSSRPLERSKPKGQVWRRALFHFLVCFVVGIFIGLTPFVSMNVK---- 109
             QAF++G+ S RSSRPLERSK +G VWRRALFHF +CF+VG+F G TPFVSMN+     
Sbjct: 61  RIQAFIIGILSQRSSRPLERSKSRGHVWRRALFHFSICFMVGVFTGFTPFVSMNLSMNLM 120

Query: 110 SKSQAFSFEMVSTVRNFHTFESMTTNMTQMVKHEAV-ENDSAIEPKVKGLKLDDVISNDM 168
           SK QAF F ++  V     +  +++       +  + +N+  + P+    +L +  + D+
Sbjct: 121 SKHQAFYFGLIPPVGKLQAYGFVSSKREMPSLNSGITDNNVTLGPQAMKQELVNGTAGDV 180

Query: 169 PINQSNP---EDLDMEVGKLLIVVTSTHARPFQAYYLNRLAFTLKLVKSPLLWIVVEMTS 225
               + P   ++ ++   KLLI+VT T+ARPFQAYYLNRLA TLK V  PLLWIVVEM S
Sbjct: 181 ----NTPTLIQNSNLVSRKLLIIVTPTYARPFQAYYLNRLAHTLKQVPPPLLWIVVEMMS 236

Query: 226 QSEQTADILRRTGVMYRHLVCNKNLTDIKDRSVHQRNVALSHIETHRLDGIVYFADDSNI 285
           QS +TAD+L RTGVMYRHL+CNKNLTDIKDR VH RN ALSHIETHRLDG VYFADD NI
Sbjct: 237 QSAETADMLMRTGVMYRHLMCNKNLTDIKDRGVHLRNTALSHIETHRLDGTVYFADDDNI 296

Query: 286 YSAELFEQMRKIR 298
           YS +LFEQ+R+IR
Sbjct: 297 YSVDLFEQIRQIR 309


>GSVIVT01009245001 assembled CDS
          Length = 381

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 105/148 (70%), Gaps = 9/148 (6%)

Query: 159 KLDDVISNDM-------PINQSNP--EDLDMEVGKLLIVVTSTHARPFQAYYLNRLAFTL 209
           +++D+ S D        P+N+ +   E  +    K +IVVT T+ R  QA+YLNRL   L
Sbjct: 94  EVEDIKSQDFSFEIKPSPVNRQSKTKERFNFIPKKQIIVVTPTYNRALQAFYLNRLGQVL 153

Query: 210 KLVKSPLLWIVVEMTSQSEQTADILRRTGVMYRHLVCNKNLTDIKDRSVHQRNVALSHIE 269
           +LV  P+LW+VVEM   S +TA+ILR+TGVMYRH+VC KN T++KDR VHQRN AL HIE
Sbjct: 154 RLVPPPILWMVVEMNVASMETAEILRKTGVMYRHIVCTKNSTNVKDRGVHQRNAALEHIE 213

Query: 270 THRLDGIVYFADDSNIYSAELFEQMRKI 297
            H+LDGIVYFADD NIYS ELF+ +R+I
Sbjct: 214 HHKLDGIVYFADDDNIYSLELFKGLREI 241


>GSVIVT01025636001 assembled CDS
          Length = 292

 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/94 (55%), Positives = 69/94 (73%)

Query: 204 RLAFTLKLVKSPLLWIVVEMTSQSEQTADILRRTGVMYRHLVCNKNLTDIKDRSVHQRNV 263
           RLA+TL+LV  PLLWIVVE  + S + ++ILR+TG+MYRHLV  +N T+      HQRN+
Sbjct: 67  RLAYTLRLVPPPLLWIVVEAQTDSSEVSEILRKTGIMYRHLVSKENFTEPAAEMDHQRNL 126

Query: 264 ALSHIETHRLDGIVYFADDSNIYSAELFEQMRKI 297
           ALSHIE H+L GIV+FA  SN+Y    F+++R I
Sbjct: 127 ALSHIEHHKLSGIVHFAALSNVYDLRFFDEIRDI 160


>GSVIVT01022064001 assembled CDS
          Length = 475

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 71/119 (59%), Gaps = 4/119 (3%)

Query: 184 KLLIVVTSTHARPFQAYYLNRLAFTLKLVKSPLLWIVVEMTSQSEQTADILRRTGVMYRH 243
           + +IVVT T+ R FQ  +L  L  +L  V   L+WIV+E    + +TA +L ++G+   H
Sbjct: 127 RTVIVVTPTYVRTFQTLHLTGLMHSLMNVPYDLIWIVIEAGGTTNETASLLAKSGLRTIH 186

Query: 244 LVCNKNLTD-IKDR---SVHQRNVALSHIETHRLDGIVYFADDSNIYSAELFEQMRKIR 298
           +  ++ + +  +DR       R  AL  +   +LDGI+ F DDSN++S ELF++++K++
Sbjct: 187 IGFDRRMPNSWEDRHRLEAQMRLRALRIVREEKLDGILMFGDDSNMHSMELFDEIQKVK 245