Jatropha Genome Database
- JcCA0268211.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0268211.10 - phase: 0
(395 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01031692001 assembled CDS 99 3e-21
GSVIVT01013538001 assembled CDS 81 1e-15
GSVIVT01008137001 assembled CDS 77 1e-14
GSVIVT01013506001 assembled CDS 77 1e-14
GSVIVT01026027001 assembled CDS 71 7e-13
GSVIVT01026026001 assembled CDS 69 3e-12
GSVIVT01030585001 assembled CDS 60 3e-09
GSVIVT01026445001 assembled CDS 59 3e-09
GSVIVT01031694001 assembled CDS 56 3e-08
>GSVIVT01031692001 assembled CDS
Length = 357
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 135/296 (45%), Gaps = 46/296 (15%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSF--------------SR 80
PVKS+I+ R VCK RT+I S+P F ++HL Q Q + +
Sbjct: 17 PVKSLIRSRCVCKAWRTLI-SHPHFVKSHLRLPQTQARTQFCTLNYGEPGDNYYLVVGAS 75
Query: 81 TFQLFEFQHENDAAFSIPIKFNIK--RSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTG 138
T F +N A + F+I + + +L SCDG LCL D + N + + NP T
Sbjct: 76 TKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDSCDGLLCLVDLA---NKIVLWNPSTR 132
Query: 139 EYINLPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLG 198
+ LP ++ + GFGY S + YKV + N V ++++L
Sbjct: 133 QCNQLPPNP--NVLDFLGCHGFGYDSFADDYKV-------FLVSMLNPNFETVVDVFSLK 183
Query: 199 DESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKF 258
W+RI + + L+G HW++Y + + +++FDFE E+F
Sbjct: 184 SNKWKRIQEKHHTR-------AARMCATVLHGALHWVAYDPILGFDT--IMAFDFEKERF 234
Query: 259 NVVLLAPSCRPKFTAMLNEVVVGVLGVCLFINDSE--FGLWVMKDYGVQESWTRLS 312
+ + P+ L V + V+G CL ++ S+ +WVMK+YGV SW++++
Sbjct: 235 REMAI-----PREEEEL-YVKLRVVGGCLCVHGSKDPSKMWVMKEYGVDTSWSKMA 284
>GSVIVT01013538001 assembled CDS
Length = 711
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 133/294 (45%), Gaps = 52/294 (17%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHL---SRSPVQFLHQSGSFSRTFQLFEFQHEN 91
PVKS+++ R VCK T+I S+PQF E HL + PV L S H++
Sbjct: 17 PVKSLLRFRCVCKAWCTLI-SHPQFVETHLRQQHKRPVIGLVVPHSVDDPL------HKD 69
Query: 92 DAAFSIPIKFNI-KRSNLFVLSSCDGFLCLGD-RSRFYN---PVKMC--NPVTGEYINLP 144
D A + + I + VL SC+G LC+ D FY+ P K+ NP T + ++P
Sbjct: 70 DLAVDLELHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYSLKPPQKLILWNPSTRQCNHIP 129
Query: 145 EKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRR 204
+ + S F Y S YK+VR I D + +++TL WRR
Sbjct: 130 CPSF-VGYQNCMYSFF-YDPGSDDYKIVR-----IFTFLGKDKTGI--DIFTLKTNKWRR 180
Query: 205 ISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYR--KCGSYRSYYMVSFDFESEKFNVVL 262
+ + + + + S+ + NG HW+++R G MV+F EKF +
Sbjct: 181 VEET----HSSVIGYWSA---TYFNGNLHWLAFRYGGYGEDERSSMVAFSLREEKFQEME 233
Query: 263 LAPSCRPKFTAMLNEVVVGVLGVCL-----FINDSEFGLWVMKDYGVQESWTRL 311
L PS R F + VLG CL + ND WVM++YG++ESW L
Sbjct: 234 L-PSQRAVFG-------LRVLGGCLCVDGLYTNDK----WVMEEYGIKESWKSL 275
>GSVIVT01008137001 assembled CDS
Length = 552
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 28/235 (11%)
Query: 35 PVKSIIQCRRVCKTLRTIITS----NPQFAENHLSRSPVQFLHQSGSFSRT--FQLFEFQ 88
P++ I++CR VCKT ++I S N Q ++H S V G + T LF
Sbjct: 167 PIELILRCRSVCKTWNSVIQSPLFINLQARKSHNQPSRVILKPIFGGVTATTMHSLFLLD 226
Query: 89 HENDAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINL--PEK 146
E + I K + + S L ++SSC+G LC+ S PV + NP+T E++ L PE
Sbjct: 227 TEERKSRRIHDK-SWRFSGLQIMSSCNGLLCITSDSEL-GPVYISNPITREFVILPSPET 284
Query: 147 GLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRIS 206
G V G G+ S + +Y VVR A ++ + E LG+ SWR ++
Sbjct: 285 GFSLLRHQV---GLGFDSSNGKYIVVR------AYTDKSKSQVNKFEAIMLGENSWRSLT 335
Query: 207 DAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV 261
P + +N VF NG HW +K G M+SFD S KF V
Sbjct: 336 -VPDIIAECTIN-----GSVFWNGALHWKIKKKPG---RECMLSFDVSSGKFAVT 381
>GSVIVT01013506001 assembled CDS
Length = 423
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 48/324 (14%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQ------FLHQSGSFSRTFQL---F 85
PVKSI++ R VCK+ T+ +P F HL ++ F H S S + L
Sbjct: 33 PVKSIVRFRCVCKSWCTLF-DDPDFISMHLRQASANSNGRLLFKHLSSSEQEIYSLRSNI 91
Query: 86 EFQHENDAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDR----SRFYNPVKMCNPVTGEYI 141
F +P K + + ++ S +G +CL + S + + NP E+
Sbjct: 92 AFAEVRRLEVPVPSKTDYYQ----IVGSSNGLICLTESNFKGSYLSLNLFLWNPAIREFQ 147
Query: 142 NLPEKGLDKRIEGVVVSGFGYS--SISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGD 199
LP+ ++ ++V G G++ + YKVVR V E D +Y+L
Sbjct: 148 TLPKYHINNFTSPLMVVGLGFAFHPVINDYKVVRIVYFMRNKTSEAD-------VYSLRT 200
Query: 200 ESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMV-SFDFESEKF 258
SWR++ + +I S+ + F+NG HW++ +K + ++ SFD + F
Sbjct: 201 GSWRKV------DANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFDMAKDVF 254
Query: 259 NVVLLAP--------SCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTR 310
++L C + L+ VL + ++ +WVM++YGV +SWT+
Sbjct: 255 KEIMLPDFGYDELIRKCLADYKGSLS-----VLFYDAYHSNENCDVWVMEEYGVAKSWTK 309
Query: 311 LSCSSHNMH-FLPIKYLRDGKKIM 333
H + +P ++ +G+ I+
Sbjct: 310 HFTIRHEIEIIIPFEFFDNGEAIL 333
>GSVIVT01026027001 assembled CDS
Length = 372
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 133/311 (42%), Gaps = 50/311 (16%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHENDAA 94
PVKS+++ + V K+ R +I S+P F + L+ + SG + + +
Sbjct: 39 PVKSLMRFKCVSKSWREMI-SDPDFEKKQLAVAA----RDSGEVYNSRLIMHYP------ 87
Query: 95 FSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNP----VKMCNPVTGEYINLPEKGLDK 150
+K L SC + +G P + + NP T E+ LP +
Sbjct: 88 -----SMKLKSCPL----SCLFYEPVGHSVNHEYPENDIIFVWNPSTREFRRLPPISFMQ 138
Query: 151 RIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAPK 210
+V GFGY SI+ YKV R I E+ +++L WR+I + P
Sbjct: 139 CFH-LVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQ-----VRVFSLRGNVWRKIENFPC 192
Query: 211 FEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYY--MVSFDFESEKFNVVLLAPSCR 268
+ +F + P G+ +NG I++ G +YY +V D SE + +V L
Sbjct: 193 Y---LFTDEP----GIHVNGS---INFGGVGDSENYYWSVVGLDLASESYRMVPLPDCAD 242
Query: 269 PKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRLSCSSHNMHFL------P 322
P M+ + +G +F ND +WVM+ YGV++SW +L + + P
Sbjct: 243 PNVKPMI--MALGGRFCTIFDNDEAVDVWVMEQYGVKKSWNKLVTVPYFPDPMTVDCTKP 300
Query: 323 IKYLRDGKKIM 333
+ +LRDG +M
Sbjct: 301 VFFLRDGAILM 311
>GSVIVT01026026001 assembled CDS
Length = 243
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 134 NPVTGEYINLPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTE 193
NP E LP K ++ +V FGY SI+ YKVVR V I +D+ E
Sbjct: 10 NPSIKESKRLPSKPFEQLFY-LVSYAFGYDSITDDYKVVRLVCCSI-----NDSYEYHVE 63
Query: 194 LYTLGDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDF 253
+++L +WR+I P F + + G +NG +W R + +++ S D
Sbjct: 64 VFSLRSNAWRKIRSFPYFLF-------TDEAGKHVNGSINWAVSRDKNN-DHWFIASLDL 115
Query: 254 ESEKFNVVLLAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRL 311
+E + VV P C + + V+ G + +F D +WVM++YGV+ESW++L
Sbjct: 116 ATESYEVVP-QPDCANETLKPIIRVLGGQFCI-IFEYDDIIDVWVMQEYGVKESWSKL 171
>GSVIVT01030585001 assembled CDS
Length = 423
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 134/306 (43%), Gaps = 55/306 (17%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSF------SRTFQLFEFQ 88
PVKSII+ + VC++ +T+ ++P F +L R+ H + S +++ +
Sbjct: 34 PVKSIIRFKCVCQSWQTLF-NDPDFINMNLRRA---ITHNNCCMLLKYLSSSEEEVYSLR 89
Query: 89 HENDAA----FSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVK----MCNP-VTGE 139
+ D A +P+ K ++ S +G +CL + + + V + NP VT +
Sbjct: 90 CDKDFAEFRRLQVPVPS--KTDYYHIVGSSNGLICLTESNNKGSYVTVDTFLWNPSVTAQ 147
Query: 140 YINLPEKGLDKRIEG---VVVSGFGYSSISKQYKVVRWVR-RKIAAREEHDNVAVVTELY 195
+ LP+ ++ + VV GF + YKVVR V K E H +Y
Sbjct: 148 WKPLPKYLINNMMTSPFMVVGLGFAFHPQIDDYKVVRIVYFLKSKTYEVH--------VY 199
Query: 196 TLGDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKC-GSYRSYYMV-SFDF 253
+L ++W+ I + + + + + F+NG HW++ +K G +S ++ SFD
Sbjct: 200 SLKQDAWKNI------DAKVHCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDLILSFDM 253
Query: 254 ESEKFNVVLL---------APSCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGV 304
+ ++L C + +L+ +V ND+ +WVM +YGV
Sbjct: 254 VEDNLREMILPEFGYDESSTQKCLADYKGLLSVLVYNAHRC----NDN-CDIWVMDEYGV 308
Query: 305 QESWTR 310
SWT+
Sbjct: 309 ASSWTK 314
>GSVIVT01026445001 assembled CDS
Length = 378
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 45/287 (15%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSR-SPVQFLHQSGSFSRTFQLFEFQHENDA 93
P K+++ + VCK R II S+ F ++ L R P+ +G F + + +++ E+ +
Sbjct: 15 PTKTLLGLKCVCKRWRRII-SDRSFIQDLLQRPEPL-----AGFFFQ--ERYQWCDEDIS 66
Query: 94 AFS-IPIK----------FNIKRSNLFVLSSCDGFLCLGDRSRFYNP---VKMCNPVTGE 139
S IP F+ ++ +L SC+G +C RS F +P + +CNP +
Sbjct: 67 TISYIPATMEGTQVQQTIFSFLPEDVVILGSCNGLVCC--RSVFPSPDPSIFVCNPSNKQ 124
Query: 140 YINLPEKGLDKRIE-GVVVSGFGYS-SISKQYKVVRWVRRKIAAREEHDNVAVVTELYTL 197
+I L E DK G+ + F + +KVVR + A + D+ E+Y+
Sbjct: 125 WIRLLETTPDKESSYGLAFNPFQSPIDMPTNFKVVRVSQ---AQTDMDDDSYFSFEIYSS 181
Query: 198 GDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEK 257
+W++ + + +++F N G+F+ G+ HW++ ++SF+ E+E
Sbjct: 182 QAGAWKKSKEICQCNHNLFKN-----KGIFVGGILHWLT-------DGDQVLSFNIENE- 228
Query: 258 FNVVLLAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFGL--WVMKDY 302
+ ++ AP TA+ + G +I SE GL W ++DY
Sbjct: 229 LSWLISAPFPTIHLTAIPEMCIGESRGRLHYIMISEDGLQVWALEDY 275
>GSVIVT01031694001 assembled CDS
Length = 184
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFL--------------HQSGSFSR 80
PVKS+I+ R VCK RT+I S+P F +H Q H +
Sbjct: 17 PVKSLIRFRCVCKAWRTLI-SHPHFVRSHFRLPQTQARTRLCIIDYSERGDNHSMVVRAS 75
Query: 81 TFQLFEFQHENDAAFSIPIKFNIK--RSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTG 138
T F + + + F+I + + +L SCDG LC+ D + N + + NP T
Sbjct: 76 TKDCEAFSDNDGGSLAFDYLFDIGKFKHEVVLLDSCDGLLCIADLA---NKIVLWNPSTR 132
Query: 139 EYINLPEKGLDKRIEGVVVSGFGYSSISKQYKV 171
++ LP ++ V GFGY S + YK+
Sbjct: 133 QFNQLPPNP--NVVDFVGCHGFGYDSSADDYKI 163