Jatropha Genome Database

JcCA0267991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0267991.10 - phase: 0 /partial
         (368 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017761001 assembled CDS                                       551   e-157
GSVIVT01034373001 assembled CDS                                       159   2e-39
GSVIVT01015488001 assembled CDS                                       147   6e-36
GSVIVT01015236001 assembled CDS                                       146   2e-35
GSVIVT01036648001 assembled CDS                                       114   5e-26
GSVIVT01001320001 assembled CDS                                        54   8e-08

>GSVIVT01017761001 assembled CDS
          Length = 525

 Score =  551 bits (1421), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/335 (80%), Positives = 295/335 (88%), Gaps = 5/335 (1%)

Query: 35  VVARFSADNGVVELRFLHDSNATDFINVDLSTAQLFKLGPDQSVCIAEGLESDSNKEK-Y 93
           VVA FSA +  +ELRF  DS+++D I  DL  AQ+FKL P QSVCI+EG  S++ KEK Y
Sbjct: 35  VVACFSAAS--LELRFQQDSDSSDVIKFDLQAAQVFKLSPVQSVCISEG--SEAAKEKSY 90

Query: 94  SRGITIQFRNEEESRTFHCAFEQWKNEVIVQGTTLPNGALTAPKSKFDYKIEPSSAKMYF 153
           SRGI I+F NEE+S+ F+CAFEQWK E  VQ   LPNG ++  KSKFD KIE SSAKMYF
Sbjct: 91  SRGIVIEFNNEEQSKAFYCAFEQWKKEAFVQEAQLPNGTVSTSKSKFDDKIEASSAKMYF 150

Query: 154 HYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFFGRVVVDVGAGSGILSLFAAQAGAKHV 213
           HYYGQLLHQQNMLQDYVRTGTY+AAVIENR DF GRVVVDVGAGSGILSLFAAQAGAKHV
Sbjct: 151 HYYGQLLHQQNMLQDYVRTGTYFAAVIENRTDFTGRVVVDVGAGSGILSLFAAQAGAKHV 210

Query: 214 YAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIMISEPMGTLLVNERML 273
           YAVEASEMAEYARKLIAGNPSLG+RITV+KGKVE+VELPEKADI+ISEPMGTLLVNERML
Sbjct: 211 YAVEASEMAEYARKLIAGNPSLGKRITVVKGKVEDVELPEKADILISEPMGTLLVNERML 270

Query: 274 ESYVIARDRFLHPNGKMFPTVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLQPLYG 333
           ESYVIARDRFL P+GKMFP +GRIHMAPFSDEYLF+EIANKALFWQQQ+YYGVDL PLYG
Sbjct: 271 ESYVIARDRFLIPDGKMFPGIGRIHMAPFSDEYLFIEIANKALFWQQQSYYGVDLTPLYG 330

Query: 334 SAFQGYFSQPVVDAFDPRLLVAPATFHVIDFTEIK 368
           SAFQGYFSQPVVDAFDPRLLVAP+  H IDF +IK
Sbjct: 331 SAFQGYFSQPVVDAFDPRLLVAPSISHTIDFAKIK 365


>GSVIVT01034373001 assembled CDS
          Length = 414

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 18/215 (8%)

Query: 136 PKSKFDYKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFFGRVVVDVG 195
           P + FD        K YF  Y  +   + M++D VRT TY AA+ +++    G+VVVDVG
Sbjct: 55  PCTDFD--------KAYFQSYSHVGIHEEMIKDRVRTETYKAAITQHQNSIAGKVVVDVG 106

Query: 196 AGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 255
            G+GILS+F AQ GAK VYAV+ASE+A  A  ++  N +L + + V+ G+VE+VE+ E  
Sbjct: 107 CGTGILSIFCAQVGAKRVYAVDASEIAIQASAVVKAN-NLSDTVIVLHGRVEDVEIDEGV 165

Query: 256 DIMISEPMGTLLVNERMLESYVIARDRFLHPNGKMFPTVGRIHMAPF--SDEYLFVEIAN 313
           D++ISE MG +L+ E MLES + ARDR+L P G + P+   ++MAP   +D Y      +
Sbjct: 166 DVIISEWMGYMLLYESMLESVITARDRWLKPGGLILPSSATLYMAPVTHTDRY-----RD 220

Query: 314 KALFWQQQNYYGVDLQPLYGSAFQGYFSQPVVDAF 348
              FW  +N YG+D+  +   A Q  F +P V+  
Sbjct: 221 SIDFW--RNVYGIDMSAMLALAKQCAFEEPSVETI 253


>GSVIVT01015488001 assembled CDS
          Length = 337

 Score =  147 bits (372), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 30/214 (14%)

Query: 165 MLQDYVRTGTYYAAVIENRADFFGR-VVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAE 223
           ML D VR   YY A+ EN+  F G+  V+DVG GSGIL++++AQAGA+ VYAVEA++M+E
Sbjct: 1   MLSDRVRMDAYYNAIFENKHHFRGKKAVLDVGTGSGILAIWSAQAGARKVYAVEATKMSE 60

Query: 224 YARKLIAGNPSLGERITVIKGKVEEVELPEKADIMISEPMGTLLVNERMLESYVIARDRF 283
           +AR+L+  N +L + + VI+G VE+V LPEK D++ISE MG  L+ E M +S + ARDR+
Sbjct: 61  HARELVKAN-NLQDIVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVISARDRW 119

Query: 284 LHPNGKMFPTVGRIHMAP----------------FSDEYLFVEIANKALFWQQQNYYGVD 327
           L P G M+P+  R+ MAP                 +D   FV         + +N YGVD
Sbjct: 120 LKPTGVMYPSHARMWMAPIRSGLVDQKKNDYEGSMNDWLCFVN--------ETKNDYGVD 171

Query: 328 L----QPLYGSAFQGYFSQPVVDAFDPRLLVAPA 357
           +    +P      + Y    + +   P  +V  A
Sbjct: 172 MSVLTKPFSEEQRKYYLQTSLWNNLHPHQVVGTA 205


>GSVIVT01015236001 assembled CDS
          Length = 350

 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 125/213 (58%), Gaps = 13/213 (6%)

Query: 145 EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFFGRVVVDVGAGSGILSLF 204
           + +SA  YF  Y      + ML+D VRT TY   + +N+  F  +VV+DVGAG+GILSLF
Sbjct: 25  DKTSADYYFDSYSHFGIHEEMLKDVVRTKTYQNVIYKNKFLFKNKVVLDVGAGTGILSLF 84

Query: 205 AAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADIMISEPM 263
            A+AGAKHVYAVE S MA+ A++++  N    + ITV+KGKVEE+ LP  + DI+ISE M
Sbjct: 85  CAKAGAKHVYAVECSHMADMAKEIVEVN-GFSDVITVMKGKVEEIVLPVAQVDIIISEWM 143

Query: 264 GTLLVNERMLESYVIARDRFLHPNGKMFPTVGRIHMAPFSD-EYLFVEIANKALFWQQQN 322
           G  L+ E ML + + ARD++L  +G + P    +++    D EY      +K  FW   +
Sbjct: 144 GYFLLFENMLNTVLYARDKWLVNDGIVLPDKASLYLTAIEDAEYK----EDKIEFW--NS 197

Query: 323 YYGVDLQPLYGSAFQGYFSQPVVDAFDPRLLVA 355
            YG D+  +   A      +P+VD  D   +V 
Sbjct: 198 VYGFDMSCIKKQAMM----EPLVDTVDQNQIVT 226


>GSVIVT01036648001 assembled CDS
          Length = 603

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 113/234 (48%), Gaps = 25/234 (10%)

Query: 152 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFFGRVVVDVGAGSGILSLFAAQAGAK 211
           YF  Y      + M+ D VR   Y  A++ N +   G  V+DVG G+GILSLFAAQAGA 
Sbjct: 232 YFGAYSSFGIHREMISDKVRMDAYRQAILNNPSLMKGATVLDVGCGTGILSLFAAQAGAS 291

Query: 212 HVYAVEASE-MAEYARK-------LIAGNPSLGER-----ITVIKGKVEEVELPEKA--- 255
            V AVEASE MA  A +       L + +P+ G       I V++G VEE++   ++   
Sbjct: 292 RVIAVEASEKMASVATQVAKDNGLLCSASPNAGNNHYTGVIKVVQGMVEELDKSIESHSI 351

Query: 256 DIMISEPMGTLLVNERMLESYVIARDRFLHPNGKMFPTVGRIHMAPFSDEYLFVEIANKA 315
           D+++SE MG  L+ E ML S + ARD +L P G + P    I +A F             
Sbjct: 352 DVLLSEWMGYCLLYESMLSSVLFARDHWLKPGGAILPDTATIFVAGFG------RGGTSI 405

Query: 316 LFWQQQNYYGVDLQPLYGSAFQGYFSQPVVDAFDPRLLVA-PATFHVIDFTEIK 368
            FW  +N YG ++  +     +     P+VD  D   +V   A     D   +K
Sbjct: 406 PFW--ENVYGFNMSCVGKELVEDAAQTPIVDIVDSHDIVTDAAVLQTFDLVTMK 457


>GSVIVT01001320001 assembled CDS
          Length = 738

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 19/145 (13%)

Query: 164 NMLQDYVRTGTYYAAVIENRADFFGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-- 220
           +ML D  R   +  A+  ++       V+D+GAG+G+LS+ AA+A G+    A   +E  
Sbjct: 75  DMLNDSRRNRAFREAI--DKTVTKNCRVLDIGAGTGLLSMMAARAMGSGDSVACPRTEGM 132

Query: 221 ---------MAEYARKLIAGNPSLGERITVIKGKVEE----VELPEKADIMISEPMGTLL 267
                    M +  RK++  N  +G +I VI  + +E    V++  +AD+++SE + + L
Sbjct: 133 VTACESYLPMVKLMRKVLHLN-GMGRKINVINKRSDELNIGVDITSRADVLVSEILDSEL 191

Query: 268 VNERMLESYVIARDRFLHPNGKMFP 292
           + E ++ +   A D  L  N K  P
Sbjct: 192 LGEGLIPTLQHAHDMLLVENAKTVP 216